Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00455	PS417_00460	PS417_00465	PS417_00470	PS417_00475
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-5.2	N.D.	-0.0	+0.2	-1.7
solid stress	Fraxetin 3 mM; solid stress	-1.6	N.D.	-0.5	+0.1	-4.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-5.9	N.D.	-0.6	+0.2	+0.3
solid stress	Fraxetin 3 mM; solid stress	+0.3	N.D.	-0.3	-0.2	-3.9
stress	LB_noSalt with Chloride 1100 mM	-2.8	N.D.	-0.2	-0.3	-0.3
solid stress	Fraxetin 3 mM; solid stress	+0.8	N.D.	-0.3	+0.3	-2.9
stress	methylglyoxal 0.032 vol%	-1.0	N.D.	-0.0	+0.5	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	N.D.	-0.6	+0.2	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	N.D.	+0.3	+0.1	-1.5
agar plate interaction control	Taped volatile agar plate with no fungus	-1.2	N.D.	+0.7	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.7	N.D.	+0.6	-0.4	+0.6
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.1	N.D.	-0.5	-0.4	-1.0
solid stress	Fraxetin 3 mM; solid stress	+1.1	N.D.	-0.2	+0.3	-2.1
solid stress	Fraxetin 2 mM; solid stress	+0.8	N.D.	-0.4	+0.3	-1.1
carbon source	L-Valine (C)	-1.7	N.D.	-0.2	+0.7	+1.0
stress	Doxycycline hyclate 0.001 mg/ml	+1.0	N.D.	-0.4	+0.5	-1.2
stress	R2A with Fusaric 120 ug/mL	+0.2	N.D.	+0.6	+0.7	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	N.D.	-1.3	+0.4	-0.1
seeds	Growth on radish seeds for 72 hours	+0.2	N.D.	+1.1	+0.3	-1.0
phage	JP1 MOI 1	+0.7	N.D.	-1.2	+0.7	+0.6
soil	soil sample 5; outgrowth in LB	+1.9	N.D.	+0.6	+0.1	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	N.D.	-0.5	+0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.7	N.D.	-0.4	+0.4	-0.4
seeds	Growth on radish seeds for 72 hours	+0.4	N.D.	+1.6	-0.2	-0.2
soil	soil sample 6; outgrowth in LB	+1.3	N.D.	+0.3	+0.8	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.2	N.D.	-0.1	+0.2	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.0	N.D.	-0.1	-0.1	+2.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.7	N.D.	+0.8	+0.5	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.3	N.D.	+0.2	+0.1	+2.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+4.4	N.D.	+0.1	-0.4	-0.4