Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04570 and PS417_04575 overlap by 4 nucleotidesPS417_04575 and PS417_04580 are separated by 92 nucleotidesPS417_04580 and PS417_04585 overlap by 1 nucleotidesPS417_04585 and PS417_04590 are separated by 209 nucleotides PS417_04570: PS417_04570 - phospholipid-binding protein, at 1,012,471 to 1,013,052 _04570 PS417_04575: PS417_04575 - DnaA initiator-associating protein DiaA, at 1,013,049 to 1,013,642 _04575 PS417_04580: PS417_04580 - hypothetical protein, at 1,013,735 to 1,014,106 _04580 PS417_04585: PS417_04585 - hypothetical protein, at 1,014,106 to 1,015,917 _04585 PS417_04590: PS417_04590 - methyltransferase, at 1,016,127 to 1,016,999 _04590
Group Condition PS417_04570 PS417_04575 PS417_04580 PS417_04585 PS417_04590
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.3 -3.2 -3.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.7 -4.5 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.1 -4.6 -1.1
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -0.2 -3.7 -1.9
soil soil sample 2; outgrowth in LB N.D. N.D. -0.3 -4.1 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 -1.7 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 -3.7 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.2 -3.5 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.5 -2.8 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.6 -3.9 -0.3
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.2 -2.5 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.2 -3.3 -0.6
liquid stress 80% Methanol 3 mM; liquid stress N.D. N.D. -0.5 -1.5 -1.8
solid stress Fraxetin 2 mM; solid stress N.D. N.D. -0.2 -2.5 -1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -0.4 -2.7 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. -0.2 -2.2 -1.2
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. -0.4 -1.1 -2.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -0.3 -2.1 -1.1
stress R2A with Fusaric 120 ug/mL N.D. N.D. -0.2 -2.7 -0.4
stress Nalidixic 0.025 mg/ml N.D. N.D. +0.0 -1.5 -1.8
soil soil sample 6; outgrowth in LB N.D. N.D. +0.1 -3.1 -0.2
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.5 -1.6 -1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -0.0 -2.8 -0.3
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.3 -1.8 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.2 -2.1 -0.7
liquid stress 80% Methanol 3 mM; liquid stress N.D. N.D. +0.1 -1.0 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.0 -2.3 -0.9
phage P. simiae OR1 MOI 0.1 N.D. N.D. -1.0 +0.7 -1.6
stress Gentamicin 0.008 mg/ml N.D. N.D. -0.9 +3.6 -3.5
stress Neomycin 0.04 mg/ml N.D. N.D. +0.4 +4.0 -0.3
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