Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04560 and PS417_04565 are separated by 192 nucleotidesPS417_04565 and PS417_04570 are separated by 61 nucleotidesPS417_04570 and PS417_04575 overlap by 4 nucleotidesPS417_04575 and PS417_04580 are separated by 92 nucleotides PS417_04560: PS417_04560 - beta-lactamase, at 1,010,799 to 1,011,443 _04560 PS417_04565: PS417_04565 - cell envelope biogenesis protein OmpA, at 1,011,636 to 1,012,409 _04565 PS417_04570: PS417_04570 - phospholipid-binding protein, at 1,012,471 to 1,013,052 _04570 PS417_04575: PS417_04575 - DnaA initiator-associating protein DiaA, at 1,013,049 to 1,013,642 _04575 PS417_04580: PS417_04580 - hypothetical protein, at 1,013,735 to 1,014,106 _04580
Group Condition PS417_04560 PS417_04565 PS417_04570 PS417_04575 PS417_04580
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -0.6 N.D. N.D. -0.6
phage P. simiae OR1 MOI 0.1 -0.7 -0.3 N.D. N.D. -1.0
stress Gentamicin 0.008 mg/ml -0.8 -0.3 N.D. N.D. -0.9
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -0.0 N.D. N.D. -1.4
phage JP1 MOI 0.1 -0.6 -0.7 N.D. N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.0 N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.1 N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -0.5 N.D. N.D. +0.2
seeds Growth on radish seeds for 72 hours -0.4 -0.5 N.D. N.D. +0.4
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.4 -0.4 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -0.2 N.D. N.D. +0.4
solid stress Fraxetin 3 mM; solid stress +0.4 +0.0 N.D. N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -1.0 N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 -0.1 N.D. N.D. -0.3
seeds Growth on radish seeds for 72 hours +0.6 -0.1 N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -0.4 N.D. N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 -0.5 N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.4 N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.4 N.D. N.D. -0.3
phage Wcs_1 +0.4 -0.4 N.D. N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.5 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.5 N.D. N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +0.4 N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.4 N.D. N.D. +0.2
soil soil sample 3; outgrowth in LB +0.6 +0.3 N.D. N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.2 N.D. N.D. +1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.1 N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.2 N.D. N.D. +1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.3 N.D. N.D. +0.4
stress methylglyoxal 0.032 vol% +0.1 -0.2 N.D. N.D. +2.0
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