Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04535	PS417_04540	PS417_04545	PS417_04550	PS417_04555
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-3.3	+0.1	-0.2	-0.3	-0.4
stress	Benzalkonium Chloride 0.012 mg/ml	-0.2	+0.1	-2.0	+0.1	+0.1
stress	LB_noSalt with Chloride 500 mM	-0.2	-0.0	-1.1	-0.2	-0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.9	+0.3	-0.3	-0.4	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.5	+0.1	-0.2	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-0.4	-0.2	-0.0
stress	LB_noSalt with Chloride 1100 mM	+0.7	-0.1	-0.4	-0.2	-0.3
phage	P. simiae Grant Run MOI 10	+0.6	-0.0	-0.2	-0.0	-0.6
phage	P. simiae Grant Run MOI 10	+0.6	-0.3	-0.1	+0.0	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.1	+0.3	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.2	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.1	-0.1	+0.1	-0.3
soil	soil sample 4; outgrowth in LB	-0.4	+0.2	+0.2	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	+0.5	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.3	-0.4	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.3	+0.3	+0.2	+0.2
seeds	Growth on radish seeds for 24 hours	+1.1	-0.2	+0.0	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.2	+0.2	+0.0	-0.2
soil	soil sample 7; outgrowth in LB	+0.9	+0.1	+0.2	-0.0	-0.1
carbon source	octanoate (C)	-0.1	-0.3	+0.4	+0.6	+0.4
soil	soil sample 6; outgrowth in LB	+1.0	-0.2	+0.1	+0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	+0.1	+0.2	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	-0.2	+0.2	+0.2	+0.5
carbon source	L-Valine (C)	+1.0	-0.3	+0.1	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.2	+0.3	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.2	+0.5	+0.4	+0.3
carbon source	octanoate (C)	-0.1	-0.3	+0.6	+0.6	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	+0.5	+0.4	+0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	+0.2	+0.1	-0.1	+0.1
seeds	Growth on radish seeds for 72 hours	+0.6	+0.0	+0.3	+0.5	+0.4