Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04520	PS417_04525	PS417_04530	PS417_04535	PS417_04540
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	+0.0	+0.6	-3.3	+0.1
phage	P. simiae OR1 MOI 0.1	N.D.	-0.4	-1.5	-0.1	-0.3
phage	JP1 MOI 0.1	N.D.	-0.8	-0.2	-0.7	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	-0.8	-0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-1.3	+0.6	-0.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	+0.3	-0.8	-0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-1.1	+0.5	+0.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+0.6	-0.1	-0.9	+0.3
carbon source	Carbon source L-Citrulline 10 mM	N.D.	-0.3	+0.8	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.7	-1.0	+0.6	-0.1
stress	methylglyoxal 0.032 vol%	N.D.	-0.9	+1.0	+0.6	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.9	+1.4	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.5	+1.0	-0.1
seeds	Growth on radish seeds for 72 hours	N.D.	+0.5	-0.7	+0.6	+0.0
carbon source	L-Valine (C)	N.D.	-0.5	+0.5	+1.0	-0.3
soil	soil sample 6; outgrowth in LB	N.D.	+0.8	-0.8	+1.0	-0.2
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.4	+1.0	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.3	+0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.3	+1.1	+0.6	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	+1.3	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.7	+0.8	-0.3	+0.1
stress	Gentamicin 0.008 mg/ml	N.D.	+1.8	-0.9	+0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.6	+1.4	+0.2
soil	soil sample 2; outgrowth in LB	N.D.	+0.5	+1.3	-0.2	+0.0
nitrogen source	Adenine (N)	N.D.	+0.9	+0.6	+0.4	-0.2
motility	inner cut, LB soft agar motility assay	N.D.	+0.4	+0.6	+0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.9	+0.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.6	+0.6	+0.8	+0.1
seeds	Growth on radish seeds for 24 hours	N.D.	+0.8	+0.8	+1.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	+1.2	+1.0	+0.1