Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04500	PS417_04505	PS417_04510	PS417_04515	PS417_04520
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.1	N.D.	-0.1	+0.0	N.D.
phage	P. simiae Grant Run MOI 0.1	-1.6	N.D.	-0.1	-1.5	N.D.
phage	P. simiae OR Antrim MOI 0.1	-1.2	N.D.	-0.1	-1.8	N.D.
liquid stress	80% Methanol 2 mM; liquid stress	-2.4	N.D.	-0.3	+0.1	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-1.8	N.D.	-0.2	-0.3	N.D.
stress	methylglyoxal 0.032 vol%	-1.8	N.D.	-0.3	-0.1	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	N.D.	-0.1	+0.1	N.D.
liquid stress	Fraxetin 2 mM; liquid stress	-1.8	N.D.	+0.1	-0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	N.D.	-0.0	+0.0	N.D.
phage	P. simiae OR Antrim MOI 0.1	-0.7	N.D.	+0.1	-1.2	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.5	N.D.	-0.1	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.5	N.D.	-0.0	-0.2	N.D.
carbon source	Carbon source L-Citrulline 5 mM	-1.8	N.D.	+0.1	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.8	N.D.	-0.1	+0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.8	N.D.	+0.1	+0.2	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-1.6	N.D.	+0.2	+0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.6	N.D.	+0.1	+0.1	N.D.
phage	JP1 MOI 10	-1.3	N.D.	-0.4	+0.3	N.D.
stress	6-methoxy-2(3H)-benzoxazolone 1.2 mM	-1.3	N.D.	+0.2	-0.2	N.D.
phage	JP1 MOI 0.1	-0.8	N.D.	-0.6	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	N.D.	+0.3	+0.8	N.D.
phage	P. simiae Grant Run MOI 10	+2.0	N.D.	-0.2	-1.5	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	N.D.	-0.4	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	N.D.	-0.0	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	N.D.	+0.1	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.0	N.D.	-0.1	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2	N.D.	+0.5	+0.2	N.D.
phage	P. simiae OR1 MOI 0.1	+0.6	N.D.	+0.4	+1.1	N.D.
carbon source	L-Valine (C)	+2.8	N.D.	+0.1	-0.3	N.D.
seeds	Growth on radish seeds for 72 hours	+1.9	N.D.	+0.4	+0.3	N.D.