Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04480	PS417_04485	PS417_04490	PS417_04495	PS417_04500
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	N.D.	-0.1	-4.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.6	N.D.	-0.1	-1.8
liquid stress	80% Methanol 2 mM; liquid stress	N.D.	+0.2	N.D.	+0.0	-2.4
carbon source	Carbon source L-Citrulline 5 mM	N.D.	-0.4	N.D.	+0.0	-1.8
liquid stress	Fraxetin 2 mM; liquid stress	N.D.	-0.1	N.D.	-0.2	-1.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.5	N.D.	-0.2	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	N.D.	-0.4	-1.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	N.D.	+0.2	N.D.	+0.0	-1.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.6	N.D.	+0.5	-1.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-0.5	N.D.	+0.4	-1.5
supernatant control	Vogels_fungal_media 0.1X	N.D.	-1.1	N.D.	+0.3	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	N.D.	+0.3	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	N.D.	-0.3	-1.4
phage	P. simiae Grant Run MOI 0.1	N.D.	+0.3	N.D.	+0.3	-1.6
phage	JP1 MOI 1	N.D.	+0.4	N.D.	+0.0	-1.5
stress	methylglyoxal 0.032 vol%	N.D.	+0.4	N.D.	+0.4	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	N.D.	+0.4	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.9	N.D.	-0.1	-1.8
carbon source	L-Valine (C)	N.D.	+0.9	N.D.	-0.5	-0.9
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.2	N.D.	+0.6	-1.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.5	N.D.	-0.9	+0.5
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.3	N.D.	-1.0	+0.9
phage	Wcs_0.1	N.D.	+0.2	N.D.	-0.5	+1.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.3	N.D.	+1.2	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	N.D.	-0.1	+1.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	N.D.	+0.2	+1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.0	N.D.	+0.2	+2.0
seeds	Growth on radish seeds for 72 hours	N.D.	+0.1	N.D.	+0.4	+1.9
carbon source	L-Valine (C)	N.D.	+0.1	N.D.	-0.4	+2.8
phage	P. simiae Grant Run MOI 10	N.D.	+0.4	N.D.	+0.1	+2.0