Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04445 and PS417_04450 are separated by 35 nucleotidesPS417_04450 and PS417_04455 are separated by 191 nucleotidesPS417_04455 and PS417_04460 are separated by 69 nucleotidesPS417_04460 and PS417_04470 are separated by 718 nucleotides PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629 _04445 PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150 _04450 PS417_04455: PS417_04455 - aminopeptidase, at 988,342 to 988,629 _04455 PS417_04460: PS417_04460 - malate:quinone oxidoreductase, at 988,699 to 990,207 _04460 PS417_04470: PS417_04470 - hypothetical protein, at 990,926 to 991,159 _04470
Group Condition PS417_04445 PS417_04450 PS417_04455 PS417_04460 PS417_04470
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.8 N.D. N.D. N.D.
carbon source L-Valine (C) -0.2 -1.0 N.D. N.D. N.D.
stress Doxycycline hyclate 0.001 mg/ml -0.3 -1.0 N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay -0.9 -0.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.8 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.3 -0.7 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.4 N.D. N.D. N.D.
carbon source Trisodium citrate (C) -0.5 -0.3 N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB -0.2 -0.7 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -0.7 -0.0 N.D. N.D. N.D.
solid stress 80% Methanol 0.5 mM; solid stress -0.3 -0.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.0 N.D. N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.7 +0.0 N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.1 -0.7 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.2 N.D. N.D. N.D.
nophagecontrol Only library -0.6 +0.2 N.D. N.D. N.D.
phage JP1 MOI 1 -0.6 +0.3 N.D. N.D. N.D.
carbon source L-Valine (C) +0.3 -0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 +0.4 N.D. N.D. N.D.
phage Wcs_0.1 +0.4 -0.4 N.D. N.D. N.D.
phage JP1 MOI 10 -0.4 +0.5 N.D. N.D. N.D.
phage Wcs_1 +0.7 -0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.3 N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 0.1 +0.9 -0.3 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -0.1 +0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +0.7 N.D. N.D. N.D.
phage P. simiae Grant Run MOI 0.1 +0.5 +0.3 N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.5 +0.4 N.D. N.D. N.D.
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