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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF866 and GFF867 are separated by 27 nucleotides
GFF867 and GFF868 are separated by 8 nucleotides
GFF868 and GFF869 are separated by 153 nucleotides
GFF869 and GFF870 are separated by 496 nucleotides
GFF866 - no description, at 174,251 to 174,571
GFF866
GFF867 - Oxidoreductase, GMC family, at 174,599 to 176,224
GFF867
GFF868 - Uracil-DNA glycosylase, family 1, at 176,233 to 177,084
GFF868
GFF869 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 177,238 to 177,891
GFF869
GFF870 - TonB-dependent receptor, at 178,388 to 180,517
GFF870
Group
Condition
GFF866
GFF867
GFF868
GFF869
GFF870
complex community
Community=Kojac gum; Passage=4
-0.8
-0.6
-1.0
-0.3
-0.6
complex community
Community=Locust bean gum; Passage=4
-1.3
-0.0
-0.1
-0.8
+0.1
complex community
Community=guar; Passage=4
+0.1
-0.5
-2.1
+0.1
+0.3
complex community
Community=arabino-guar; Passage=4
-0.8
-0.3
-1.2
-0.2
+0.6
complex community
Community=Locust bean gum; Passage=4
-0.5
+0.2
-0.6
-0.5
-0.4
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.4
-1.0
-0.7
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.1
-1.2
-0.1
+0.1
complex community
Community=guar; Passage=4
+0.1
-0.4
-0.6
-0.3
+0.1
phage
phage_bap4
+0.1
-0.1
-1.0
-0.2
+0.1
complex community
Community=guar; Passage=4
+0.2
-0.3
-0.6
-0.5
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
-0.1
-0.4
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.0
-0.4
-0.3
+0.1
phage
phage_bap4
+0.0
-0.4
-0.5
+0.0
-0.0
phage
phage_bap4
-0.2
-0.0
-0.4
-0.3
+0.1
phage
phage_bap4
-0.3
+0.1
-0.7
-0.0
+0.2
no phage control
no phage control
-0.4
-0.2
-0.3
+0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.0
-1.1
+0.1
+0.3
phage
phage_bap4
-0.0
+0.1
-0.7
-0.1
+0.1
complex community
Community=guar; Passage=4
+0.6
-0.4
-0.2
-0.5
-0.0
no phage control
no phage control
-0.2
-0.3
-0.3
+0.1
+0.1
complex community
Community=Kojac gum; Passage=1
-0.0
-0.2
+0.4
-0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
-0.1
+0.5
-0.3
+0.0
complex community
Community=arabino-guar; Passage=4
+0.4
-0.3
+0.3
-0.5
+0.0
phage
phage_bap4
+0.3
+0.0
-0.3
-0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.1
+0.4
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.1
+0.5
+0.2
+0.0
phage
phage_bap4
-0.0
+0.1
+0.4
-0.3
+0.2
complex community
Community=arabino-guar; Passage=4
+0.6
-0.1
+0.1
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
+0.2
+0.4
+0.5
-0.5
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.2
+1.0
-0.0
+0.1
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