Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04375 and PS417_04380 overlap by 1 nucleotidesPS417_04380 and PS417_04385 overlap by 1 nucleotidesPS417_04385 and PS417_04390 are separated by 11 nucleotidesPS417_04390 and PS417_04395 overlap by 4 nucleotides PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169 _04375 PS417_04380: PS417_04380 - ABC transporter permease, at 977,169 to 977,966 _04380 PS417_04385: PS417_04385 - organic solvent ABC transporter substrate-binding protein, at 977,966 to 978,433 _04385 PS417_04390: PS417_04390 - toluene tolerance protein, at 978,445 to 979,095 _04390 PS417_04395: PS417_04395 - anti-sigma factor antagonist, at 979,092 to 979,397 _04395
Group Condition PS417_04375 PS417_04380 PS417_04385 PS417_04390 PS417_04395
stress Benzalkonium Chloride 0.012 mg/ml -3.6 -5.0 -6.5 -4.8 N.D.
carbon source octanoate (C) -4.3 -5.3 -4.2 -5.3 N.D.
stress Doxycycline hyclate 0.001 mg/ml -3.2 -4.6 -5.6 -4.9 N.D.
carbon source octanoate (C) -2.8 -5.5 -4.9 -4.3 N.D.
stress Tetracycline 0.001 mg/ml -3.8 -4.9 -4.4 -3.6 N.D.
stress Nalidixic 0.015 mg/ml -3.3 -4.1 -3.7 -4.0 N.D.
soil soil sample 6; outgrowth in LB -3.3 -4.8 -4.6 -2.1 N.D.
soil soil sample 3; outgrowth in LB -2.2 -4.6 -3.3 -4.6 N.D.
stress Nalidixic 0.025 mg/ml -3.0 -4.0 -3.5 -3.6 N.D.
soil soil sample 7; outgrowth in LB -0.9 -5.0 -3.9 -2.9 N.D.
stress methylglyoxal 0.032 vol% -4.0 -3.4 -2.2 -2.9 N.D.
soil soil sample 2; outgrowth in LB -2.8 -4.8 -3.1 -1.6 N.D.
soil soil sample 5; outgrowth in LB -3.1 -4.7 -2.6 -1.8 N.D.
stress Chloramphenicol 0.0075 mg/ml -3.4 -3.8 -2.5 -2.2 N.D.
stress Chloramphenicol 0.015 mg/ml -1.9 -2.9 -3.7 -2.8 N.D.
soil soil sample 4; outgrowth in LB -2.2 -3.0 -3.0 -1.8 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -1.1 -3.4 -1.9 -3.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 -2.3 -3.0 -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.5 -3.7 -0.6 -1.9 N.D.
root root sample 6; outgrowth in LB -1.1 -3.1 -2.3 -2.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 -2.2 -2.4 -2.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.3 -2.7 -1.0 -2.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.9 -3.9 -1.6 -1.0 N.D.
stress Lomefloxacin 0.0001 mM -2.9 -1.6 -2.0 -1.8 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.2 -2.0 -3.6 -2.4 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 -3.8 -1.1 -2.8 N.D.
solid stress Fraxetin 2 mM; solid stress -0.9 -2.5 -3.3 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.0 +3.1 -1.5 -2.2 N.D.
stress Gentamicin 0.008 mg/ml +2.2 +1.6 +2.5 +2.1 N.D.
carbon source L-Valine (C) +3.0 +3.4 +2.1 +2.2 N.D.
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