Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_04365 and PS417_04370 are separated by 0 nucleotidesPS417_04370 and PS417_04375 are separated by 298 nucleotidesPS417_04375 and PS417_04380 overlap by 1 nucleotidesPS417_04380 and PS417_04385 overlap by 1 nucleotides PS417_04365: PS417_04365 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 974,562 to 975,086 _04365 PS417_04370: PS417_04370 - D-arabinose 5-phosphate isomerase, at 975,087 to 976,061 _04370 PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169 _04375 PS417_04380: PS417_04380 - ABC transporter permease, at 977,169 to 977,966 _04380 PS417_04385: PS417_04385 - organic solvent ABC transporter substrate-binding protein, at 977,966 to 978,433 _04385
Group Condition PS417_04365 PS417_04370 PS417_04375 PS417_04380 PS417_04385
stress Benzalkonium Chloride 0.012 mg/ml -1.8 N.D. -3.6 -5.0 -6.5
carbon source octanoate (C) -2.8 N.D. -4.3 -5.3 -4.2
carbon source octanoate (C) -2.5 N.D. -2.8 -5.5 -4.9
soil soil sample 6; outgrowth in LB -1.6 N.D. -3.3 -4.8 -4.6
soil soil sample 2; outgrowth in LB -2.6 N.D. -2.8 -4.8 -3.1
stress Tetracycline 0.001 mg/ml -0.0 N.D. -3.8 -4.9 -4.4
soil soil sample 7; outgrowth in LB -2.8 N.D. -0.9 -5.0 -3.9
soil soil sample 3; outgrowth in LB -2.5 N.D. -2.2 -4.6 -3.3
stress Doxycycline hyclate 0.001 mg/ml +1.2 N.D. -3.2 -4.6 -5.6
soil soil sample 5; outgrowth in LB -1.5 N.D. -3.1 -4.7 -2.6
stress Nalidixic 0.025 mg/ml -1.1 N.D. -3.0 -4.0 -3.5
stress Nalidixic 0.015 mg/ml -0.4 N.D. -3.3 -4.1 -3.7
soil soil sample 4; outgrowth in LB -2.4 N.D. -2.2 -3.0 -3.0
stress Chloramphenicol 0.0075 mg/ml -0.7 N.D. -3.4 -3.8 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 N.D. -3.5 -3.7 -0.6
solid stress Fraxetin 2 mM; solid stress -2.7 N.D. -0.9 -2.5 -3.3
stress methylglyoxal 0.032 vol% +1.2 N.D. -4.0 -3.4 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 N.D. -2.8 -3.6 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.8 N.D. -1.3 -2.0 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.8 N.D. -1.5 -3.8 -1.1
rhizosphere rhizosphere sample 1; outgrowth in LB -1.7 N.D. -1.1 -3.4 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 N.D. -2.0 -2.2 -2.4
stress Chloramphenicol 0.015 mg/ml +0.5 N.D. -1.9 -2.9 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 N.D. -1.9 -3.9 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. -2.6 -2.3 -3.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.8 N.D. -1.3 -4.5 -1.1
stress Lomefloxacin 0.0001 mM -1.2 N.D. -2.9 -1.6 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. -3.0 +3.1 -1.5
stress Gentamicin 0.008 mg/ml -1.8 N.D. +2.2 +1.6 +2.5
carbon source L-Valine (C) -2.7 N.D. +3.0 +3.4 +2.1
remove
PS417_04365
plot		 remove
PS417_04370
plot		 remove
PS417_04375		 remove
PS417_04380
plot		 remove
PS417_04385
plot