Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04360 and PS417_04365 are separated by 8 nucleotidesPS417_04365 and PS417_04370 are separated by 0 nucleotidesPS417_04370 and PS417_04375 are separated by 298 nucleotidesPS417_04375 and PS417_04380 overlap by 1 nucleotides PS417_04360: PS417_04360 - lipopolysaccharide ABC transporter permease, at 973,981 to 974,553 _04360 PS417_04365: PS417_04365 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 974,562 to 975,086 _04365 PS417_04370: PS417_04370 - D-arabinose 5-phosphate isomerase, at 975,087 to 976,061 _04370 PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169 _04375 PS417_04380: PS417_04380 - ABC transporter permease, at 977,169 to 977,966 _04380
Group Condition PS417_04360 PS417_04365 PS417_04370 PS417_04375 PS417_04380
carbon source octanoate (C) N.D. -2.8 N.D. -4.3 -5.3
carbon source octanoate (C) N.D. -2.5 N.D. -2.8 -5.5
stress Benzalkonium Chloride 0.012 mg/ml N.D. -1.8 N.D. -3.6 -5.0
soil soil sample 2; outgrowth in LB N.D. -2.6 N.D. -2.8 -4.8
soil soil sample 6; outgrowth in LB N.D. -1.6 N.D. -3.3 -4.8
soil soil sample 5; outgrowth in LB N.D. -1.5 N.D. -3.1 -4.7
soil soil sample 3; outgrowth in LB N.D. -2.5 N.D. -2.2 -4.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.9 N.D. -3.5 -3.7
stress Tetracycline 0.001 mg/ml N.D. -0.0 N.D. -3.8 -4.9
soil soil sample 7; outgrowth in LB N.D. -2.8 N.D. -0.9 -5.0
stress Nalidixic 0.025 mg/ml N.D. -1.1 N.D. -3.0 -4.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 N.D. -2.8 -3.6
stress Chloramphenicol 0.0075 mg/ml N.D. -0.7 N.D. -3.4 -3.8
stress Nalidixic 0.015 mg/ml N.D. -0.4 N.D. -3.3 -4.1
soil soil sample 4; outgrowth in LB N.D. -2.4 N.D. -2.2 -3.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.8 N.D. -1.5 -3.8
stress Doxycycline hyclate 0.001 mg/ml N.D. +1.2 N.D. -3.2 -4.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.8 N.D. -1.3 -4.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. -1.9 -3.9
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.7 N.D. -1.1 -3.4
stress methylglyoxal 0.032 vol% N.D. +1.2 N.D. -4.0 -3.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.8 N.D. -1.3 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.5 N.D. -2.3 -2.3
solid stress Fraxetin 2 mM; solid stress N.D. -2.7 N.D. -0.9 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.0 N.D. -2.7 +0.5
solid stress Scopoletin 0.5 mM; solid stress N.D. -2.7 N.D. +0.7 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. -3.0 +3.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +3.9 N.D. +0.9 -1.7
carbon source L-Valine (C) N.D. -2.7 N.D. +3.0 +3.4
stress Phosphomycin 0.001 mg/ml N.D. +5.1 N.D. +0.7 +0.8
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