Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04355 and PS417_04360 overlap by 14 nucleotidesPS417_04360 and PS417_04365 are separated by 8 nucleotidesPS417_04365 and PS417_04370 are separated by 0 nucleotidesPS417_04370 and PS417_04375 are separated by 298 nucleotides PS417_04355: PS417_04355 - organic solvent tolerance protein OstA, at 973,461 to 973,994 _04355 PS417_04360: PS417_04360 - lipopolysaccharide ABC transporter permease, at 973,981 to 974,553 _04360 PS417_04365: PS417_04365 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 974,562 to 975,086 _04365 PS417_04370: PS417_04370 - D-arabinose 5-phosphate isomerase, at 975,087 to 976,061 _04370 PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169 _04375
Group Condition PS417_04355 PS417_04360 PS417_04365 PS417_04370 PS417_04375
carbon source octanoate (C) N.D. N.D. -2.8 N.D. -4.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -3.0 N.D. -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.9 N.D. -3.5
stress Benzalkonium Chloride 0.012 mg/ml N.D. N.D. -1.8 N.D. -3.6
soil soil sample 2; outgrowth in LB N.D. N.D. -2.6 N.D. -2.8
carbon source octanoate (C) N.D. N.D. -2.5 N.D. -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -3.1 N.D. -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.2 N.D. -2.8
soil soil sample 6; outgrowth in LB N.D. N.D. -1.6 N.D. -3.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -3.1 N.D. -1.8
soil soil sample 3; outgrowth in LB N.D. N.D. -2.5 N.D. -2.2
soil soil sample 4; outgrowth in LB N.D. N.D. -2.4 N.D. -2.2
soil soil sample 5; outgrowth in LB N.D. N.D. -1.5 N.D. -3.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.1 N.D. -3.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.8 N.D. -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.7 N.D. -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. -3.3
soil soil sample 8; outgrowth in LB N.D. N.D. -2.7 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -3.2 N.D. -1.0
stress Lomefloxacin 0.0001 mM N.D. N.D. -1.2 N.D. -2.9
stress methylglyoxal 0.032 vol% N.D. N.D. +1.2 N.D. -4.0
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. +1.2 N.D. -3.2
carbon source L-Valine (C) N.D. N.D. -2.3 N.D. +2.3
carbon source L-Valine (C) N.D. N.D. -2.7 N.D. +3.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +3.2 N.D. +1.0
stress Neomycin 0.04 mg/ml N.D. N.D. +3.5 N.D. +0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +3.9 N.D. +0.9
stress Phosphomycin 0.002 mg/ml N.D. N.D. +4.6 N.D. +0.7
stress Phosphomycin 0.003 mg/ml N.D. N.D. +5.0 N.D. +0.5
stress Phosphomycin 0.001 mg/ml N.D. N.D. +5.1 N.D. +0.7
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