Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_04335 and PS417_04340 are separated by 10 nucleotidesPS417_04340 and PS417_04345 are separated by 75 nucleotidesPS417_04345 and PS417_04350 are separated by 185 nucleotidesPS417_04350 and PS417_04355 overlap by 1 nucleotides PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665 _04335 PS417_04340: PS417_04340 - ribosome hibernation promoting factor HPF, at 970,676 to 970,981 _04340 PS417_04345: PS417_04345 - RNA polymerase factor sigma-54, at 971,057 to 972,550 _04345 PS417_04350: PS417_04350 - sugar ABC transporter ATP-binding protein, at 972,736 to 973,461 _04350 PS417_04355: PS417_04355 - organic solvent tolerance protein OstA, at 973,461 to 973,994 _04355
Group Condition PS417_04335 PS417_04340 PS417_04345 PS417_04350 PS417_04355
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -2.9 N.D. N.D. N.D.
soil soil sample 5; outgrowth in LB N.D. -2.6 N.D. N.D. N.D.
soil soil sample 6; outgrowth in LB N.D. -2.3 N.D. N.D. N.D.
soil soil sample 4; outgrowth in LB N.D. -2.3 N.D. N.D. N.D.
soil soil sample 8; outgrowth in LB N.D. -2.3 N.D. N.D. N.D.
root root sample 6; outgrowth in LB N.D. -2.2 N.D. N.D. N.D.
soil soil sample 3; outgrowth in LB N.D. -2.2 N.D. N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -2.0 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -2.0 N.D. N.D. N.D.
phage JP1 MOI 10 N.D. -1.9 N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.8 N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% N.D. -1.7 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -1.6 N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB N.D. -1.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.5 N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.5 N.D. N.D. N.D.
phage JP1 MOI 1 N.D. -1.5 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.4 N.D. N.D. N.D.
stress R2A with Fusaric 120 ug/mL N.D. -1.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.4 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 N.D. N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.3 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -1.2 N.D. N.D. N.D.
stress R2A with Fusaric 120 ug/mL N.D. -1.2 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -1.2 N.D. N.D. N.D.
stress Gentamicin 0.008 mg/ml N.D. +1.6 N.D. N.D. N.D.
remove
PS417_04335
plot		 remove
PS417_04340
plot		 remove
PS417_04345		 remove
PS417_04350
plot		 remove
PS417_04355
plot