Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04320 and PS417_04325 are separated by 88 nucleotidesPS417_04325 and PS417_04330 are separated by 16 nucleotidesPS417_04330 and PS417_04335 are separated by 2 nucleotidesPS417_04335 and PS417_04340 are separated by 10 nucleotides PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963 _04320 PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324 _04325 PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198 _04330 PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665 _04335 PS417_04340: PS417_04340 - ribosome hibernation promoting factor HPF, at 970,676 to 970,981 _04340
Group Condition PS417_04320 PS417_04325 PS417_04330 PS417_04335 PS417_04340
soil soil sample 5; outgrowth in LB -0.5 N.D. N.D. N.D. -2.6
soil soil sample 8; outgrowth in LB -0.5 N.D. N.D. N.D. -2.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.2 N.D. N.D. N.D. -2.9
soil soil sample 3; outgrowth in LB -0.5 N.D. N.D. N.D. -2.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 N.D. N.D. N.D. -1.4
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 N.D. N.D. N.D. -2.0
root root sample 6; outgrowth in LB +0.1 N.D. N.D. N.D. -2.2
stress methylglyoxal 0.032 vol% -0.4 N.D. N.D. N.D. -1.7
soil soil sample 7; outgrowth in LB -0.4 N.D. N.D. N.D. -1.6
soil soil sample 6; outgrowth in LB +0.3 N.D. N.D. N.D. -2.3
soil soil sample 4; outgrowth in LB +0.3 N.D. N.D. N.D. -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. N.D. -1.3
phage JP1 MOI 10 +0.1 N.D. N.D. N.D. -1.9
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 N.D. N.D. N.D. -1.8
seeds Growth on radish seeds for 72 hours -1.0 N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. N.D. N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. N.D. N.D. -1.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.0 N.D. N.D. N.D. -1.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. N.D. N.D. -1.5
phage JP1 MOI 10 -0.4 N.D. N.D. N.D. -1.2
stress Phosphomycin 0.001 mg/ml -0.4 N.D. N.D. N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 N.D. N.D. N.D. -1.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 N.D. N.D. N.D. -2.0
stress R2A with Fusaric 120 ug/mL +0.2 N.D. N.D. N.D. -1.4
phage JP1 MOI 1 +0.3 N.D. N.D. N.D. -1.5
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 N.D. N.D. N.D. -1.3
stress R2A with Fusaric 120 ug/mL +0.4 N.D. N.D. N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 N.D. N.D. N.D. -0.7
stress Gentamicin 0.008 mg/ml +0.2 N.D. N.D. N.D. +1.6
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PS417_04320
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PS417_04325
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PS417_04335
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PS417_04340
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