Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF83 and GFF84 are separated by 112 nucleotidesGFF84 and GFF85 are separated by 131 nucleotidesGFF85 and GFF86 are separated by 41 nucleotidesGFF86 and GFF87 overlap by 4 nucleotides GFF83 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 99,554 to 100,615 GFF83 GFF84 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 100,728 to 101,444 GFF84 GFF85 - Transcriptional regulator, LysR family, at 101,576 to 102,475 GFF85 GFF86 - Cell morphology protein, at 102,517 to 103,191 GFF86 GFF87 - no description, at 103,188 to 103,868 GFF87
Group Condition GFF83 GFF84 GFF85 GFF86 GFF87
complex community Community=guar; Passage=4 -0.1 -2.8 -0.5 -0.7 -0.2
complex community Community=Kojac gum; Passage=4 -0.1 -3.2 +0.0 +0.1 -0.3
phage phage_bap4 -0.1 -1.1 -0.6 -0.3 -0.8
complex community Community=guar; Passage=4 +0.3 -2.1 -0.7 +0.4 -0.0
complex community Community=Locust bean gum; Passage=4 -0.6 -0.5 -0.5 -0.3 -0.3
complex community Community=Locust bean gum; Passage=4 -0.1 -2.3 +0.9 -0.0 -0.4
phage phage_bap4 -0.3 -0.2 -0.1 -0.3 -0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -1.2 -0.3 -0.1 +0.4
no phage control no phage control -0.1 -0.6 +0.0 +0.1 -0.5
complex community Community=arabino-guar; Passage=4 +0.2 -0.0 +0.1 -0.2 -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.8 +0.5 -0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 -0.2 -0.1 +0.3 -0.4
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.3 -0.1 -0.5 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.5 -0.3 +0.1 +0.1
phage phage_bap4 +0.2 -1.2 +0.3 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.5 +0.4 -0.1 -0.2
phage phage_bap4 +0.2 +0.3 -0.4 +0.1 -0.6
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.2 -0.6 +0.4 +0.1
complex community Community=Locust bean gum; Passage=4 +0.2 +0.9 -0.6 +0.3 -1.0
complex community Community=arabino-guar; Passage=4 +0.7 -1.0 -0.4 -0.5 +1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.4 +0.3 +0.1 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.4 +0.2 +0.1 -0.6
complex community Community=guar; Passage=4 -0.3 +0.2 -0.2 -0.5 +1.0
complex community Community=guar; Passage=4 +0.1 +0.3 -0.9 +0.9 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.4 +0.1 -0.1 +0.4
complex community Community=arabino-guar; Passage=4 +0.1 +1.2 -1.1 +0.5 +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.3 +0.4 +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.4 +0.1 +0.4 +0.1
complex community Community=Locust bean gum; Passage=4 -0.1 +1.1 +1.2 -0.4 +0.6
complex community Community=arabino-guar; Passage=4 +0.6 +0.8 +0.2 +0.2 +0.6
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