Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF835 and GFF836 overlap by 4 nucleotidesGFF836 and GFF837 are separated by 34 nucleotidesGFF837 and GFF838 overlap by 4 nucleotidesGFF838 and GFF839 are separated by 317 nucleotides GFF835 - Two-component system sensor histidine kinase, at 140,351 to 141,631 GFF835 GFF836 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 141,628 to 142,569 GFF836 GFF837 - FIG01002808: hypothetical protein, at 142,604 to 143,455 GFF837 GFF838 - hypothetical protein, at 143,452 to 144,552 GFF838 GFF839 - Retron-type RNA-directed DNA polymerase (EC 2.7.7.49), at 144,870 to 146,816 GFF839
Group Condition GFF835 GFF836 GFF837 GFF838 GFF839
complex community Community=guar; Passage=4 +0.5 -1.0 -0.5 +0.3 -3.5
complex community Community=arabino-guar; Passage=4 +0.0 -2.0 -0.1 -0.9 -0.1
complex community Community=guar; Passage=4 +0.3 -1.9 -0.9 -0.1 -0.4
complex community Community=guar; Passage=4 +0.0 -1.6 -0.2 +0.5 -1.2
complex community Community=arabino-guar; Passage=4 -0.1 -0.8 -0.2 -0.5 -0.4
complex community Community=Locust bean gum; Passage=4 +0.1 -1.9 +0.5 -0.7 +0.2
complex community Community=guar; Passage=4 -0.0 -0.7 -1.1 -1.6 +1.8
complex community Community=Locust bean gum; Passage=4 +0.1 -0.8 -0.0 +0.1 -0.7
phage phage_bap4 -0.2 -0.4 -0.2 -0.5 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.2 +0.0 -0.4 -0.4
phage phage_bap4 -0.0 -0.7 -0.1 +0.1 -0.2
complex community Community=arabino-guar; Passage=4 -0.3 -0.9 -0.1 +0.2 +0.2
complex community Community=Kojac gum; Passage=4 +0.1 -1.8 -0.2 +0.4 +0.7
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.1 -0.1 +0.3 -0.6
phage phage_bap4 -0.1 -0.2 -0.1 +0.3 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.1 +0.3 -0.6 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.4 +0.3 +0.4 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.2 +0.3 -0.2 -0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.3 +0.2 -0.1 -0.4
phage phage_bap4 -0.0 +0.3 +0.1 -0.7 +0.4
no phage control no phage control +0.2 -0.1 +0.2 -0.6 +0.4
complex community Community=arabino-guar; Passage=4 +0.2 +0.4 -0.6 +0.5 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.3 +0.2 +0.2 -0.5
complex community Community=Locust bean gum; Passage=4 +0.1 -0.7 +0.1 +0.2 +0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.4 +0.4 +0.2 -0.3
complex community Community=Locust bean gum; Passage=4 -0.2 +0.7 -0.5 -0.1 +0.7
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.3 +0.2 +0.4 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 +0.1 -0.3 +0.3 +0.6
phage phage_bap4 +0.1 +0.4 +0.1 -0.1 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 +0.4 +0.3 +0.3 -0.0
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