Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04220	PS417_04225	PS417_04230	PS417_04235	PS417_04240
carbon source	L-Leucine (C)	-4.7	-0.7	+0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-1.8	-0.3	N.D.	N.D.
root	root sample 6; outgrowth in LB	-2.4	-0.1	-0.4	N.D.	N.D.
carbon source	L-Valine (C)	-2.4	-0.6	+0.1	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	-0.8	-0.8	N.D.	N.D.
soil	soil sample 6; outgrowth in LB	-1.5	-0.2	-1.0	N.D.	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-2.5	+0.0	+0.0	N.D.	N.D.
seeds	Growth on radish seeds for 24 hours	-1.0	-0.7	-0.6	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	-0.7	-0.6	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.9	+0.4	-0.3	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.5	-0.6	+0.2	N.D.	N.D.
stress	Neomycin 0.04 mg/ml	+0.4	-1.7	-0.2	N.D.	N.D.
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.8	-0.2	+0.5	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-2.0	+0.5	-0.0	N.D.	N.D.
nophagecontrol	Only library	-1.2	-0.6	+0.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.0	-0.3	+1.2	N.D.	N.D.
soil	soil sample 7; outgrowth in LB	+0.9	-1.6	-0.4	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.2	+0.8	-0.4	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4	+0.8	-0.1	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	-0.2	+0.9	N.D.	N.D.
solid stress	Fraxetin 3 mM; solid stress	-1.5	+0.7	+0.1	N.D.	N.D.
phage	P. simiae OR1 MOI 0.1	-1.2	-0.2	+0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.0	+1.8	+0.4	N.D.	N.D.
phage	JP1 MOI 0.1	-0.7	-0.2	+1.3	N.D.	N.D.
phage	JP1 MOI 10	-0.9	+0.8	+0.7	N.D.	N.D.
stress	methylglyoxal 0.032 vol%	-1.0	+1.0	+0.8	N.D.	N.D.
phage	P. simiae Grant Run MOI 0.1	+1.6	-0.4	+0.5	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+1.8	+0.9	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+1.2	+0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+3.2	-0.4	+0.5	N.D.	N.D.