Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04185	PS417_04190	PS417_04195	PS417_04200	PS417_04205
carbon source	D-Galacturonic Acid (C)	-0.3	-0.2	-2.9	-2.3	-2.0
carbon source	D-Galacturonic Acid (C)	-0.3	-0.2	-1.4	-2.2	-1.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-0.1	-1.2	+0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.0	-0.2	-0.0	+0.1	-0.2
soil	soil sample 5; outgrowth in LB	-0.4	-0.1	-1.2	-0.2	-0.0
solid stress	Fraxetin 2 mM; solid stress	-1.9	+0.2	+0.3	-0.1	-0.1
soil	soil sample 3; outgrowth in LB	-0.6	+0.4	-1.4	-0.0	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-1.0	-0.1	-0.7	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.2	-1.4	-0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-0.1	-0.5	+0.1	+0.2
seeds	Growth on radish seeds for 72 hours	-0.5	+0.5	-0.8	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.3	+0.3	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-1.3	+0.3	+0.2
root	root sample 6; outgrowth in LB	-0.3	+0.1	-0.8	+0.7	-0.4
soil	soil sample 4; outgrowth in LB	-0.4	+0.4	-0.6	-0.3	+0.2
phage	P. simiae ORA MOI 0.1	-1.2	-0.1	+0.4	+0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.3	-0.3	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-1.0	+0.3	-0.3
carbon source	L-Valine (C)	-0.5	+0.3	-0.6	-0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.1	+0.1	+0.2	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.2	-0.2	+0.4	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.9	-0.0	-1.1	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.4	-0.0	-0.9	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.3	-0.9	+0.4	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	-0.0	-0.8	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.1	-0.1	-0.4	+0.4	-0.0
carbon source	L-Valine (C)	+0.5	+0.4	+0.0	-0.5	+0.7
soil	soil sample 7; outgrowth in LB	+0.9	+0.2	-0.7	+0.3	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	+1.3	-0.1	+0.2	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.4	+0.5	+0.2	-0.3