Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04115	PS417_04120	PS417_04125	PS417_04130	PS417_04135
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	N.D.	N.D.	-0.3	-0.1
phage	JP1 MOI 10	-1.2	N.D.	N.D.	-0.3	+0.2
phage	P. simiae ORA MOI 0.1	-0.6	N.D.	N.D.	-0.4	-0.2
solid stress	Scopoletin 3 mM; solid stress	-0.6	N.D.	N.D.	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	N.D.	N.D.	+0.1	+0.4
stress	LB_noSalt with Chloride 1100 mM	-1.1	N.D.	N.D.	+0.0	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	-0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	N.D.	N.D.	-0.1	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	+0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	N.D.	N.D.	+0.1	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-1.1	N.D.	N.D.	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	N.D.	N.D.	-0.1	+0.2
carbon source	Carbon source L-Ornithine 10 mM	-0.6	N.D.	N.D.	-0.3	+0.2
stress	LB_noSalt with Chloride 1100 mM	-0.9	N.D.	N.D.	+0.1	+0.1
stress	Choline chloride 300 mM	-0.6	N.D.	N.D.	+0.2	-0.2
carbon source	L-Valine (C)	-0.7	N.D.	N.D.	-0.3	+0.3
stress	Gentamicin 0.008 mg/ml	-1.1	N.D.	N.D.	+0.2	+0.2
stress	Doxycycline hyclate 0.001 mg/ml	-0.8	N.D.	N.D.	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9	N.D.	N.D.	+0.3	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	N.D.	N.D.	+0.5	-0.7
phage	JP1 MOI 1	-0.5	N.D.	N.D.	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	N.D.	N.D.	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	+0.2	+0.3
soil	soil sample 2; outgrowth in LB	+0.5	N.D.	N.D.	+0.4	-0.4
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.8	N.D.	N.D.	+0.1	-0.2
stress	Phosphomycin 0.001 mg/ml	+0.8	N.D.	N.D.	+0.2	-0.0
stress	methylglyoxal 0.032 vol%	+0.4	N.D.	N.D.	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	N.D.	N.D.	+0.2	+0.6