Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04110 and PS417_04115 are separated by 141 nucleotidesPS417_04115 and PS417_04120 are separated by 24 nucleotidesPS417_04120 and PS417_04125 are separated by 79 nucleotidesPS417_04125 and PS417_04130 are separated by 148 nucleotides PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146 _04110 PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923 _04115 PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303 _04120 PS417_04125: PS417_04125 - ATPase, at 927,383 to 928,477 _04125 PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621 _04130
Group Condition PS417_04110 PS417_04115 PS417_04120 PS417_04125 PS417_04130
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.6 N.D. N.D. +0.1
phage JP1 MOI 10 N.D. -1.2 N.D. N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 N.D. N.D. -0.3
stress LB_noSalt with Chloride 1100 mM N.D. -1.1 N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 N.D. N.D. -0.1
carbon source Carbon source L-Ornithine 10 mM N.D. -0.6 N.D. N.D. -0.3
carbon source L-Valine (C) N.D. -0.7 N.D. N.D. -0.3
agar plate interaction control Taped volatile agar plate with no fungus N.D. -1.1 N.D. N.D. +0.1
phage P. simiae ORA MOI 0.1 N.D. -0.6 N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. N.D. -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -0.8 N.D. N.D. -0.1
carbon source Ethanol (C) N.D. -0.8 N.D. N.D. -0.1
solid stress Scopoletin 3 mM; solid stress N.D. -0.9 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.7 N.D. N.D. -0.1
stress LB_noSalt with Chloride 1100 mM N.D. -0.9 N.D. N.D. +0.1
stress Gentamicin 0.008 mg/ml N.D. -1.1 N.D. N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 N.D. N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.9 N.D. N.D. +0.3
stress Doxycycline hyclate 0.001 mg/ml N.D. -0.8 N.D. N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.7 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.5 N.D. N.D. +0.3
carbon source L-Valine (C) N.D. -0.5 N.D. N.D. +0.3
phage JP1 MOI 1 N.D. -0.5 N.D. N.D. +0.4
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.4 N.D. N.D. +0.4
stress methylglyoxal 0.032 vol% N.D. +0.4 N.D. N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 N.D. N.D. +0.4
soil soil sample 2; outgrowth in LB N.D. +0.5 N.D. N.D. +0.4
r2a control R2A control N.D. +0.6 N.D. N.D. +0.2
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. +0.8 N.D. N.D. +0.1
stress Phosphomycin 0.001 mg/ml N.D. +0.8 N.D. N.D. +0.2
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PS417_04115
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PS417_04125
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