Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04100 and PS417_04105 are separated by 111 nucleotidesPS417_04105 and PS417_04110 are separated by 188 nucleotidesPS417_04110 and PS417_04115 are separated by 141 nucleotidesPS417_04115 and PS417_04120 are separated by 24 nucleotides PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684 _04100 PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520 _04105 PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146 _04110 PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923 _04115 PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303 _04120
Group Condition PS417_04100 PS417_04105 PS417_04110 PS417_04115 PS417_04120
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -3.3 N.D. -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -2.2 N.D. +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -2.0 N.D. +0.1 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.1 N.D. -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 N.D. -1.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 N.D. -1.0 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.6 N.D. -0.5 N.D.
phage JP1 MOI 10 N.D. +0.1 N.D. -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.7 N.D. -0.4 N.D.
stress LB_noSalt with Chloride 1100 mM N.D. +0.0 N.D. -1.1 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.1 N.D. -0.9 N.D.
stress Gentamicin 0.008 mg/ml N.D. +0.1 N.D. -1.1 N.D.
solid stress Scopoletin 3 mM; solid stress N.D. -0.0 N.D. -0.9 N.D.
stress LB_noSalt with Chloride 1100 mM N.D. +0.0 N.D. -0.9 N.D.
stress Doxycycline hyclate 0.001 mg/ml N.D. -0.1 N.D. -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 N.D. -0.8 N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.3 N.D. -1.1 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. +0.1 N.D. -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. -0.9 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.1 N.D. -0.8 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.2 N.D. -0.8 N.D.
solid stress Fraxetin 2 mM; solid stress N.D. +0.1 N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 N.D. -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.2 N.D. -0.7 N.D.
carbon source L-Valine (C) N.D. +0.3 N.D. -0.7 N.D.
r2a control R2A control N.D. +0.1 N.D. +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. +0.6 N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. +0.0 N.D. +0.8 N.D.
stress Phosphomycin 0.001 mg/ml N.D. +0.1 N.D. +0.8 N.D.
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