Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04065 and PS417_04070 are separated by 80 nucleotidesPS417_04070 and PS417_04075 are separated by 170 nucleotidesPS417_04075 and PS417_04080 are separated by 304 nucleotidesPS417_04080 and PS417_04085 are separated by 258 nucleotides PS417_04065: PS417_04065 - peptide ABC transporter substrate-binding protein, at 911,197 to 912,795 _04065 PS417_04070: PS417_04070 - porin, at 912,876 to 914,291 _04070 PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066 _04075 PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999 _04080 PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859 _04085
Group Condition PS417_04065 PS417_04070 PS417_04075 PS417_04080 PS417_04085
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.7 -4.2 -5.2 -2.7 -0.3
carbon source Gly-Glu (C) -1.7 -3.9 -3.2 -2.6 -0.9
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.9 -3.8 -3.8 -1.3 -0.0
carbon source Gly-Glu (C) -1.4 -3.5 -2.8 -2.4 -0.7
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.3 -2.9 -3.7 -1.9 -0.1
root root sample 6; outgrowth in LB -1.1 -1.4 -0.0 -3.7 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 -0.6 -0.8 -4.0 -0.2
soil soil sample 5; outgrowth in LB -0.8 -0.8 -1.6 -1.9 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -1.3 -0.8 -1.8 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.3 -0.7 -1.8 -0.1
soil soil sample 3; outgrowth in LB -0.5 -1.6 -0.5 -1.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -1.0 -0.6 -1.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.0 -0.2 -3.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.8 -0.1 -2.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.5 -0.1 -2.6 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 -0.5 -0.3 -1.6 -0.6
soil soil sample 6; outgrowth in LB -0.7 -0.8 -0.4 -1.5 +0.1
soil soil sample 7; outgrowth in LB -0.7 -0.9 -0.8 -1.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.0 -0.6 -0.7 -1.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.8 -0.6 -1.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -0.6 -0.5 -1.6 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -1.1 -1.2 -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.2 -0.9 -0.8 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.1 -1.0 -0.9 -0.7 +0.5
solid stress Fraxetin 3 mM; solid stress -0.5 +0.9 +0.7 +1.0 -0.1
agar plate interaction control Taped volatile agar plate with no fungus +0.6 +0.7 +0.5 +1.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.8 +1.3 +0.9 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.3 +0.8 +1.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.5 +1.2 +1.1 -0.1
carbon source octanoate (C) +0.2 +1.1 +0.8 +1.5 +0.1
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