Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00395 and PS417_00400 are separated by 56 nucleotidesPS417_00400 and PS417_00405 are separated by 74 nucleotidesPS417_00405 and PS417_00410 are separated by 269 nucleotidesPS417_00410 and PS417_00415 are separated by 192 nucleotides PS417_00395: PS417_00395 - serine kinase, at 76,603 to 77,556 _00395 PS417_00400: PS417_00400 - hypothetical protein, at 77,613 to 77,903 _00400 PS417_00405: PS417_00405 - DNA polymerase I, at 77,978 to 80,755 _00405 PS417_00410: PS417_00410 - GTP-binding protein, at 81,025 to 81,666 _00410 PS417_00415: PS417_00415 - cytochrome, at 81,859 to 82,161 _00415
Group Condition PS417_00395 PS417_00400 PS417_00405 PS417_00410 PS417_00415
stress Cisplatin 0.01 mg/ml N.D. N.D. -3.2 N.D. N.D.
stress L-Lysine 60 mM N.D. N.D. -2.6 N.D. N.D.
stress Choline Lysine 25 mM N.D. N.D. -2.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.7 N.D. N.D.
stress LB_noSalt with Chloride 1100 mM N.D. N.D. -1.7 N.D. N.D.
stress Choline chloride 300 mM N.D. N.D. -1.7 N.D. N.D.
stress Gentamicin 0.008 mg/ml N.D. N.D. -1.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.6 N.D. N.D.
stress LB_noSalt with Chloride 1100 mM N.D. N.D. -1.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.2 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.1 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -1.1 N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.1 N.D. N.D.
stress LB_noSalt with Chloride 500 mM N.D. N.D. -1.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. N.D.
stress Cobalt chloride 0.16 mM N.D. N.D. -1.0 N.D. N.D.
soil soil sample 7; outgrowth in LB N.D. N.D. -1.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -1.0 N.D. N.D.
r2a control with 0.2x vogels R2A control with 0.2X Vogels N.D. N.D. -1.0 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.9 N.D. N.D.
no stress control TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 N.D. N.D. +1.0 N.D. N.D.
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PS417_00400
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