Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04035 and PS417_04040 are separated by 96 nucleotidesPS417_04040 and PS417_04045 are separated by 113 nucleotidesPS417_04045 and PS417_04050 overlap by 1 nucleotidesPS417_04050 and PS417_04055 are separated by 10 nucleotides PS417_04035: PS417_04035 - hypothetical protein, at 906,528 to 906,773 _04035 PS417_04040: PS417_04040 - hypothetical protein, at 906,870 to 907,124 _04040 PS417_04045: PS417_04045 - peptide ABC transporter ATP-binding protein, at 907,238 to 908,209 _04045 PS417_04050: PS417_04050 - peptide ABC transporter ATP-binding protein, at 908,209 to 909,177 _04050 PS417_04055: PS417_04055 - peptide transporter, at 909,188 to 910,099 _04055
Group Condition PS417_04035 PS417_04040 PS417_04045 PS417_04050 PS417_04055
carbon source Gly-Glu (C) -0.4 N.D. N.D. -2.7 -4.0
carbon source Gly-Glu (C) +0.0 N.D. N.D. -3.5 -3.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.0 N.D. N.D. -2.3 -3.8
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.3 N.D. N.D. -3.2 -2.8
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.0 N.D. N.D. -1.5 -3.5
soil soil sample 4; outgrowth in LB -0.1 N.D. N.D. -3.8 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. N.D. -3.3 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. -1.9 -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. N.D. -1.6 -0.8
soil soil sample 6; outgrowth in LB -0.2 N.D. N.D. -2.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 N.D. N.D. -2.2 -0.8
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. N.D. -2.1 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. -1.1 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 N.D. N.D. -1.2 -0.7
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 N.D. N.D. -1.9 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. N.D. -1.5 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. N.D. -0.7 -1.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. N.D. -1.5 -0.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. N.D. -1.3 -1.2
seeds Growth on radish seeds for 72 hours +0.2 N.D. N.D. -1.0 -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 N.D. N.D. -1.5 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. N.D. -1.9 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7 N.D. N.D. -1.1 -1.3
soil soil sample 7; outgrowth in LB -1.3 N.D. N.D. +0.6 -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 N.D. N.D. -0.4 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 N.D. N.D. -1.1 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. +1.3 -0.8
carbon source L-Valine (C) +0.9 N.D. N.D. -1.2 +1.3
solid stress Fraxetin 3 mM; solid stress -0.3 N.D. N.D. +1.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.3 N.D. N.D. -1.8 +1.8
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