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Fitness for 5 genes in
Pseudomonas simiae WCS417
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PS417_03995 and PS417_04000 are separated by 2 nucleotides
PS417_04000 and PS417_04005 are separated by 49 nucleotides
PS417_04005 and PS417_04010 are separated by 479 nucleotides
PS417_04010 and PS417_04015 overlap by 4 nucleotides
PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546
_03995
PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301
_04000
PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514
_04005
PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151
_04010
PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801
_04015
Group
Condition
PS417
_03995
PS417
_04000
PS417
_04005
PS417
_04010
PS417
_04015
solid stress
Fraxetin 3 mM; solid stress
-1.6
-1.4
-0.3
-0.1
-0.2
stress
LB_noSalt with Chloride 1100 mM
-0.1
-0.2
-0.1
-1.7
-1.4
liquid stress
Fraxetin 3 mM; liquid stress
-2.2
-1.6
+0.2
+0.5
-0.2
phage
P. simiae OR1 MOI 0.1
+0.7
+0.0
-0.1
-2.5
-1.3
nophagecontrol
Only library
-0.8
-0.1
+0.1
-0.8
-1.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.1
-0.0
-0.9
-1.3
seeds
Growth on radish seeds for 72 hours
-0.3
-0.4
-0.1
-0.6
-1.0
phage
P. simiae ORA MOI 0.1
+0.3
-0.1
-0.3
-1.2
-1.0
liquid stress
Fraxetin 3 mM; liquid stress
-1.3
-1.5
+0.3
+0.1
+0.1
stress
LB_noSalt with Chloride 500 mM
+0.0
-0.1
-0.0
-1.1
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
+0.1
-0.1
-1.1
-0.9
stress
LB_noSalt with Chloride 1100 mM
-0.0
+0.0
+0.1
-1.3
-1.0
liquid stress
Fraxetin 3 mM; liquid stress
-1.2
-1.1
+0.2
-0.0
+0.0
solid stress
Fraxetin 3 mM; solid stress
-1.4
-1.1
-0.2
+0.1
+0.6
liquid stress
Fraxetin 3 mM; liquid stress
-1.3
-1.1
+0.2
+0.2
+0.0
liquid stress
Fraxetin 2 mM; liquid stress
-1.2
-0.7
+0.0
-0.3
+0.4
solid stress
Fraxetin 3 mM; solid stress
-1.4
-0.9
-0.2
+0.2
+0.6
seeds
Growth on radish seeds for 24 hours
-0.1
+0.6
-0.4
-0.6
-1.1
liquid stress
Fraxetin 2 mM; liquid stress
-1.2
-0.7
+0.0
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.2
-0.1
-0.9
-0.8
liquid stress
Fraxetin 2 mM; liquid stress
-1.4
-0.6
+0.2
+0.4
+0.3
liquid stress
Fraxetin 3 mM; liquid stress
-0.9
-1.2
+0.2
+0.5
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
-1.2
+0.3
+0.1
-0.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.1
+0.1
-1.1
-0.7
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.2
+0.3
-0.6
-0.6
+0.4
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.6
+0.2
-0.5
-1.0
+0.6
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.6
+0.2
+0.6
+0.2
-0.8
carbon source
Gly-Glu (C)
+0.3
-0.1
+1.5
-0.2
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.5
+0.6
+0.2
-0.0
+1.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.6
+0.6
+0.1
+0.6
+0.8
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