Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03995 and PS417_04000 are separated by 2 nucleotidesPS417_04000 and PS417_04005 are separated by 49 nucleotidesPS417_04005 and PS417_04010 are separated by 479 nucleotidesPS417_04010 and PS417_04015 overlap by 4 nucleotides PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546 _03995 PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301 _04000 PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514 _04005 PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151 _04010 PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801 _04015
Group Condition PS417_03995 PS417_04000 PS417_04005 PS417_04010 PS417_04015
solid stress Fraxetin 3 mM; solid stress -1.6 -1.4 -0.3 -0.1 -0.2
stress LB_noSalt with Chloride 1100 mM -0.1 -0.2 -0.1 -1.7 -1.4
liquid stress Fraxetin 3 mM; liquid stress -2.2 -1.6 +0.2 +0.5 -0.2
phage P. simiae OR1 MOI 0.1 +0.7 +0.0 -0.1 -2.5 -1.3
nophagecontrol Only library -0.8 -0.1 +0.1 -0.8 -1.0
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.2 +0.1 -0.0 -0.9 -1.3
seeds Growth on radish seeds for 72 hours -0.3 -0.4 -0.1 -0.6 -1.0
phage P. simiae ORA MOI 0.1 +0.3 -0.1 -0.3 -1.2 -1.0
liquid stress Fraxetin 3 mM; liquid stress -1.3 -1.5 +0.3 +0.1 +0.1
stress LB_noSalt with Chloride 500 mM +0.0 -0.1 -0.0 -1.1 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.1 -0.1 -1.1 -0.9
stress LB_noSalt with Chloride 1100 mM -0.0 +0.0 +0.1 -1.3 -1.0
liquid stress Fraxetin 3 mM; liquid stress -1.2 -1.1 +0.2 -0.0 +0.0
solid stress Fraxetin 3 mM; solid stress -1.4 -1.1 -0.2 +0.1 +0.6
liquid stress Fraxetin 3 mM; liquid stress -1.3 -1.1 +0.2 +0.2 +0.0
liquid stress Fraxetin 2 mM; liquid stress -1.2 -0.7 +0.0 -0.3 +0.4
solid stress Fraxetin 3 mM; solid stress -1.4 -0.9 -0.2 +0.2 +0.6
seeds Growth on radish seeds for 24 hours -0.1 +0.6 -0.4 -0.6 -1.1
liquid stress Fraxetin 2 mM; liquid stress -1.2 -0.7 +0.0 +0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.2 -0.1 -0.9 -0.8
liquid stress Fraxetin 2 mM; liquid stress -1.4 -0.6 +0.2 +0.4 +0.3
liquid stress Fraxetin 3 mM; liquid stress -0.9 -1.2 +0.2 +0.5 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 +0.3 +0.1 -0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.1 +0.1 -1.1 -0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 +0.3 -0.6 -0.6 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +0.2 -0.5 -1.0 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.2 +0.6 +0.2 -0.8
carbon source Gly-Glu (C) +0.3 -0.1 +1.5 -0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.6 +0.2 -0.0 +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.6 +0.1 +0.6 +0.8
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