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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_03980 and PS417_03985 are separated by 99 nucleotides
PS417_03985 and PS417_03990 are separated by 136 nucleotides
PS417_03990 and PS417_03995 are separated by 204 nucleotides
PS417_03995 and PS417_04000 are separated by 2 nucleotides
PS417_03980: PS417_03980 - alkaline phosphatase, at 891,073 to 892,614
_03980
PS417_03985: PS417_03985 - flavodoxin, at 892,714 to 895,239
_03985
PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661
_03990
PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546
_03995
PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301
_04000
Group
Condition
PS417
_03980
PS417
_03985
PS417
_03990
PS417
_03995
PS417
_04000
liquid stress
Fraxetin 3 mM; liquid stress
-0.1
-1.3
-2.1
-2.2
-1.6
liquid stress
Fraxetin 3 mM; liquid stress
-0.0
-1.4
-2.2
-1.3
-1.5
solid stress
Fraxetin 3 mM; solid stress
+0.1
-0.4
-2.4
-1.6
-1.4
liquid stress
Fraxetin 3 mM; liquid stress
+0.3
-1.2
-1.9
-1.3
-1.1
liquid stress
Fraxetin 3 mM; liquid stress
-0.0
-0.9
-1.7
-1.2
-1.1
liquid stress
Fraxetin 3 mM; liquid stress
+0.1
-0.9
-1.6
-0.9
-1.2
solid stress
Fraxetin 3 mM; solid stress
+0.1
+0.0
-1.8
-1.4
-1.1
solid stress
Fraxetin 3 mM; solid stress
+0.0
-0.1
-1.7
-1.4
-0.9
solid stress
Fraxetin 3 mM; solid stress
-0.0
-0.1
-1.6
-0.5
-0.7
solid stress
Fraxetin 2 mM; solid stress
+0.0
-0.1
-1.2
-1.2
-0.4
liquid stress
Fraxetin 2 mM; liquid stress
+0.0
-0.1
-0.8
-1.2
-0.7
liquid stress
Fraxetin 2 mM; liquid stress
+0.0
-0.2
-0.7
-1.2
-0.7
liquid stress
Fraxetin 2 mM; liquid stress
+0.2
-0.2
-0.8
-1.4
-0.6
solid stress
Fraxetin 2 mM; solid stress
-0.1
-0.1
-1.2
-0.7
-0.6
solid stress
Fraxetin 2 mM; solid stress
+0.1
-0.2
-0.9
-1.0
-0.5
solid stress
Fraxetin 2 mM; solid stress
-0.0
-0.0
-1.3
-0.5
-0.5
solid stress
Fraxetin 2 mM; solid stress
+0.2
-0.1
-1.4
-0.7
-0.4
liquid stress
Fraxetin 2 mM; liquid stress
-0.1
-0.2
-0.8
-0.5
-0.7
liquid stress
Fraxetin 2 mM; liquid stress
-0.1
-0.1
-0.6
-0.9
-0.5
solid stress
80% Methanol 0.5 mM; solid stress
+0.1
-0.1
-0.7
-0.9
-0.4
solid stress
Fraxetin 1 mM; solid stress
-0.0
+0.1
-0.8
-1.1
-0.2
solid stress
Fraxetin 1 mM; solid stress
+0.0
-0.1
-0.7
-1.1
-0.2
solid stress
Fraxetin 1 mM; solid stress
-0.1
-0.0
-0.8
-0.7
-0.3
solid stress
Fraxetin 1 mM; solid stress
+0.0
-0.0
-0.7
-0.7
-0.2
solid stress
Fraxetin 1 mM; solid stress
+0.2
-0.1
-0.7
-0.6
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
-0.1
+0.2
-0.2
-1.2
+0.3
in planta
Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
-0.2
-0.0
-0.2
+0.9
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.2
+0.4
+0.2
-0.5
+0.6
phage
JP1 MOI 10
+0.3
+0.2
-0.1
+1.0
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.4
+0.3
-0.0
+0.6
+0.6
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