Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03955 and PS417_03960 are separated by 2 nucleotidesPS417_03960 and PS417_03965 are separated by 293 nucleotidesPS417_03965 and PS417_03970 are separated by 0 nucleotidesPS417_03970 and PS417_03975 are separated by 11 nucleotides PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236 _03955 PS417_03960: PS417_03960 - transcriptional regulator, at 884,239 to 885,234 _03960 PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data), at 885,528 to 888,386 _03965 PS417_03970: PS417_03970 - 1-phosphofructokinase, at 888,387 to 889,307 _03970 PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028 _03975
Group Condition PS417_03955 PS417_03960 PS417_03965 PS417_03970 PS417_03975
carbon source D-Fructose (C) +0.1 N.D. -4.2 -2.9 -4.4
carbon source D-Mannose (C) +0.3 N.D. -3.9 -3.6 -3.2
carbon source D-Fructose (C) -0.1 N.D. -3.6 -3.0 -3.6
carbon source D-Mannose (C) +0.4 N.D. -4.1 -2.6 -3.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.2 N.D. +0.5 -4.9 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -1.4 -0.6 -0.7
carbon source D-Sorbitol (C) -0.2 N.D. -0.9 +0.2 -1.1
carbon source D-Sorbitol (C) +0.0 N.D. -1.4 +0.7 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.8 -1.2 +0.1
soil soil sample 5; outgrowth in LB -0.3 N.D. +0.2 -2.0 +0.3
soil soil sample 7; outgrowth in LB +0.2 N.D. +0.3 -1.8 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.2 N.D. +0.9 -1.8 +0.0
carbon source L-Valine (C) +0.7 N.D. +0.6 -2.0 +0.0
soil soil sample 4; outgrowth in LB -0.1 N.D. +0.6 -1.1 +0.4
carbon source Xylitol (C) -0.3 N.D. -0.1 +1.4 -0.4
phage P. simiae OR Antrim MOI 1 -0.5 N.D. +0.2 +1.1 +0.7
phage JP1 MOI 10 -0.2 N.D. +0.8 +0.4 +0.9
phage P. simiae ORA MOI 1 -0.2 N.D. +0.8 +0.7 +0.5
phage P. simiae OR Antrim MOI 0.1 -0.6 N.D. +0.7 +1.0 +0.9
phage P. simiae OR Antrim MOI 1 -0.1 N.D. +0.7 +0.6 +0.9
phage P. simiae Grant Run MOI 10 -0.3 N.D. +0.8 +1.1 +0.7
phage JP1 MOI 1 -0.4 N.D. +0.7 +1.3 +0.6
phage P. simiae Grant Run MOI 10 -0.3 N.D. +1.1 +0.6 +0.9
phage P. simiae OR Antrim MOI 10 -0.4 N.D. +0.7 +1.5 +0.7
phage JP1 MOI 10 +0.2 N.D. +0.8 +0.5 +1.0
phage P. simiae OR Antrim MOI 0.1 +0.2 N.D. +0.8 +0.8 +0.6
phage JP1 MOI 1 -0.1 N.D. +0.6 +1.3 +0.7
phage P. simiae Grant Run MOI 0.1 -0.3 N.D. +0.8 +1.2 +0.9
phage JP1 MOI 0.1 +0.2 N.D. +0.7 +0.7 +1.2
phage P. simiae OR Antrim MOI 10 +0.1 N.D. +0.7 +1.9 +0.7
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PS417_03955
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PS417_03960
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PS417_03970
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