Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03935	PS417_03940	PS417_03945	PS417_03950	PS417_03955
root	root sample 6; outgrowth in LB	-3.9	-0.0	+0.8	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.5	+0.1	-0.1	-0.3
soil	soil sample 6; outgrowth in LB	-2.7	-0.1	+0.2	+0.3	+0.0
stress	Polymyxin B sulfate 0.006 mg/ml	-2.0	-0.2	+0.0	-0.1	+0.1
soil	soil sample 8; outgrowth in LB	-2.3	+0.7	+0.2	-0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.7	+0.3	+0.1	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.7	+0.3	-0.3	-0.3	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.3	+0.0	+0.2	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.4	+0.0	-0.0	-0.6
seeds	Growth on radish seeds for 72 hours	-1.4	+0.4	+0.1	-0.1	-0.4
supernatant control	Vogels_fungal_media 0.1X	-1.7	+0.6	-0.0	-0.1	-0.2
phage	P. simiae OR Antrim MOI 1	-0.5	-0.4	-0.4	+0.4	-0.5
phage	JP1 MOI 10	-1.6	-0.2	+0.6	+0.1	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.1	-0.7	+0.3	+0.3	-0.0
solid stress	Fraxetin 3 mM; solid stress	-2.1	+0.4	+0.2	-0.2	+0.4
seeds	Growth on radish seeds for 72 hours	-0.9	-0.3	+0.1	+0.8	-0.8
supernatant control	Vogels_fungal_media; pH 5.5	-1.3	+0.3	+0.2	-0.2	+0.3
phage	P. simiae OR1 MOI 0.1	-0.8	+0.5	-0.3	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	-0.1	+0.3	+0.4	-0.3
soil	soil sample 2; outgrowth in LB	-1.3	-0.2	+0.5	-0.1	+0.4
soil	soil sample 4; outgrowth in LB	-1.6	+0.7	+0.2	+0.2	-0.1
liquid stress	Fraxetin 3 mM; liquid stress	-1.1	+0.5	+0.0	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.3	+0.6	+0.1	+0.2	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.2	+0.8	+0.2	+0.1	+0.2
supernatant control	Vogels_fungal_media 0.1X	-1.0	+1.0	+0.2	-0.1	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.6	+0.8	+0.1	-0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.3	+0.2	+0.3	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+1.1	+0.2	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.1	-0.2	+0.5	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+1.8	+0.0	+0.1	-0.1	+0.2