Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03930 and PS417_03935 are separated by 61 nucleotidesPS417_03935 and PS417_03940 overlap by 4 nucleotidesPS417_03940 and PS417_03945 are separated by 113 nucleotidesPS417_03945 and PS417_03950 are separated by 126 nucleotides PS417_03930: PS417_03930 - thymidine phosphorylase, at 877,230 to 879,353 _03930 PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978 _03935 PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811 _03940 PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955 _03945 PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513 _03950
Group Condition PS417_03930 PS417_03935 PS417_03940 PS417_03945 PS417_03950
phage P. simiae ORA MOI 10 -5.0 -0.9 +0.2 -0.1 -0.3
phage P. simiae OR Antrim MOI 1 -5.3 -0.5 -0.1 +0.2 +0.1
phage P. simiae Grant Run MOI 0.1 -4.5 -0.1 -0.7 +0.1 -0.3
phage P. simiae OR Antrim MOI 1 -4.4 -0.5 -0.4 -0.4 +0.4
phage P. simiae OR Antrim MOI 0.1 -4.0 -1.2 -0.1 -0.0 +0.1
phage P. simiae ORA MOI 0.1 -4.4 +0.2 -0.7 +0.0 -0.3
phage P. simiae Grant Run MOI 10 -4.1 -0.1 -0.3 -0.4 -0.2
phage JP1 MOI 10 -3.8 -1.6 -0.2 +0.6 +0.1
phage P. simiae Grant Run MOI 10 -4.0 -0.4 +0.1 -0.4 -0.1
phage P. simiae ORA MOI 0.1 -4.2 -0.0 +0.1 -0.1 -0.6
phage P. simiae ORA MOI 1 -4.4 +0.3 -0.5 +0.2 -0.2
phage P. simiae OR Antrim MOI 10 -4.7 +0.1 +0.0 +0.1 -0.1
phage P. simiae Grant Run MOI 0.1 -4.1 +0.1 +0.0 -0.0 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 -1.4 -0.1 -0.1 +0.1
phage P. simiae OR Antrim MOI 10 -4.1 +0.6 -0.2 -0.2 +0.2
phage JP1 MOI 1 -2.8 +0.3 -0.4 -0.2 -0.6
phage JP1 MOI 1 -4.0 +0.1 -0.1 +0.1 +0.3
phage JP1 MOI 0.1 -4.4 +0.6 -0.1 +0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -1.5 -0.5 +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -1.2 -0.7 +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -0.2 -0.8 -0.2 +0.2
root root sample 6; outgrowth in LB +0.3 -3.9 -0.0 +0.8 +0.2
soil soil sample 6; outgrowth in LB +0.1 -2.7 -0.1 +0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -0.5 +0.8 +0.2 -0.2
soil soil sample 8; outgrowth in LB +0.4 -2.3 +0.7 +0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.4 +0.6 -0.2 +0.3 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.2 -0.6 -0.3 +0.2 -0.3
ecofab LB in EcoFAB_3.5mL +3.1 -0.1 +0.4 -0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.4 +0.2 +0.0 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +4.2 +0.1 +0.1 -0.6 +0.7
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