Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_00375 and PS417_00380 overlap by 8 nucleotidesPS417_00380 and PS417_00385 overlap by 1 nucleotidesPS417_00385 and PS417_00390 are separated by 67 nucleotidesPS417_00390 and PS417_00395 are separated by 102 nucleotides PS417_00375: PS417_00375 - membrane protein, at 73,464 to 74,252 _00375 PS417_00380: PS417_00380 - zinc ABC transporter ATP-binding protein, at 74,245 to 75,030 _00380 PS417_00385: PS417_00385 - Fur family transcriptional regulator, at 75,030 to 75,512 _00385 PS417_00390: PS417_00390 - ABC transporter substrate-binding protein, at 75,580 to 76,500 _00390 PS417_00395: PS417_00395 - serine kinase, at 76,603 to 77,556 _00395
Group Condition PS417_00375 PS417_00380 PS417_00385 PS417_00390 PS417_00395
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -0.8 -5.3 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.0 -5.4 -0.5 N.D.
soil soil sample 5; outgrowth in LB -0.7 -0.7 -4.5 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.4 -3.7 -0.6 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -0.1 -5.0 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.7 -3.5 -0.5 N.D.
soil soil sample 8; outgrowth in LB -0.1 -0.3 -4.7 -0.1 N.D.
liquid stress Scopoletin 3 mM; liquid stress -0.4 -0.1 -5.0 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.0 -3.5 -0.5 N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 -0.6 -0.4 -3.0 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 -0.6 -1.1 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.3 -0.5 -2.3 -0.2 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -0.4 -2.5 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.3 -3.3 -0.4 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.5 -0.6 -2.8 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.6 -1.7 -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -0.6 -2.4 -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.4 -2.6 -0.7 N.D.
soil soil sample 6; outgrowth in LB -0.8 -0.5 -1.9 -0.7 N.D.
solid stress 80% Methanol 2 mM; solid stress -0.3 -0.1 -3.7 +0.2 N.D.
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.9 -0.2 -2.7 -0.0 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +0.0 -3.6 -0.5 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.1 -0.2 -3.6 +0.4 N.D.
soil soil sample 7; outgrowth in LB -0.3 +0.7 -2.9 -0.2 N.D.
motility outer cut, LB soft agar motility assay -2.2 -0.7 +1.0 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 +0.5 -0.4 -1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -1.3 +1.2 -0.6 N.D.
carbon source L-Arginine (C) -0.8 -0.8 +1.5 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -0.5 +3.9 -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +1.2 +3.1 +0.8 N.D.
remove
PS417_00375
plot		 remove
PS417_00380
plot		 remove
PS417_00385		 remove
PS417_00390
plot		 remove
PS417_00395
plot