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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF754 and GFF755 are separated by 147 nucleotides
GFF755 and GFF756 overlap by 4 nucleotides
GFF756 and GFF757 overlap by 4 nucleotides
GFF757 and GFF758 are separated by 9 nucleotides
GFF754 - FIG00975093: hypothetical protein, at 17,689 to 18,522
GFF754
GFF755 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 18,670 to 20,568
GFF755
GFF756 - no description, at 20,565 to 20,711
GFF756
GFF757 - hypothetical protein, at 20,708 to 21,535
GFF757
GFF758 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 21,545 to 22,390
GFF758
Group
Condition
GFF754
GFF755
GFF756
GFF757
GFF758
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.3
+0.2
-1.8
N.D.
complex community
Community=guar; Passage=4
-0.9
+0.3
-0.1
-0.4
N.D.
complex community
Community=guar; Passage=4
-0.4
-0.1
-0.3
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-0.1
-0.0
-0.4
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
-0.5
-0.1
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.1
-0.3
-0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.0
-0.1
-0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.1
-0.2
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.0
-0.1
-0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.1
-0.2
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.2
-0.1
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.2
-0.2
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.2
-0.2
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.3
-0.1
+0.2
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.2
+0.1
-0.2
N.D.
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.0
-0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.7
+0.2
+0.0
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.0
-0.1
+0.3
N.D.
complex community
Community=arabino-guar; Passage=4
+0.0
+0.3
-0.1
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.0
+0.0
-0.2
N.D.
complex community
Community=Kojac gum; Passage=4
+0.1
+0.2
-0.3
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.0
-0.2
+0.3
N.D.
complex community
Community=guar; Passage=4
-0.5
+0.3
+0.0
+0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-1.0
+0.4
+0.2
+0.5
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
-0.1
+0.7
N.D.
complex community
Community=arabino-guar; Passage=4
-0.0
+0.2
-0.3
+0.5
N.D.
phage
phage_bap4
+0.1
+0.4
+0.1
-0.2
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
-0.1
+0.2
+0.5
N.D.
phage
phage_bap4
+0.1
+0.2
+0.1
+0.4
N.D.
phage
phage_bap4
+0.3
+0.3
+0.0
+0.3
N.D.
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