Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03805	PS417_03810	PS417_03815	PS417_03820	PS417_03825
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.5	-0.9	-1.4	N.D.	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-0.1	-1.6	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.6	-1.3	N.D.	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	+0.0	-1.5	N.D.	-0.3
stress	methylglyoxal 0.032 vol%	-0.2	-0.6	-0.8	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.0	-0.6	-1.4	N.D.	+0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.6	-1.1	N.D.	-0.2
solid stress	Fraxetin 3 mM; solid stress	-0.0	-0.6	-1.0	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	+0.1	-1.3	N.D.	-0.3
root	root sample 6; outgrowth in LB	+0.3	-0.1	-1.5	N.D.	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.1	-0.5	-1.1	N.D.	+0.2
soil	soil sample 2; outgrowth in LB	-0.1	+0.5	-2.1	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.1	-1.9	N.D.	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.4	+0.3	-1.1	N.D.	+0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	+0.3	-1.6	N.D.	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.4	-1.5	N.D.	-0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.1	+0.4	-1.2	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.5	+0.5	-0.7	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.4	-1.2	N.D.	-0.2
phage	P. simiae OR Antrim MOI 10	+0.6	+0.4	-1.4	N.D.	+0.1
soil	soil sample 5; outgrowth in LB	-0.1	-0.9	+0.8	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.5	+1.2	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	+1.4	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.2	+1.0	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	+1.2	N.D.	-0.1
phage	JP1 MOI 1	+0.0	+0.3	+1.4	N.D.	+0.1
seeds	Growth on radish seeds for 72 hours	+0.1	+1.5	-0.4	N.D.	+0.6
phage	JP1 MOI 1	+0.0	-0.0	+1.9	N.D.	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	+0.5	+1.0	N.D.	+0.0
phage	JP1 MOI 0.1	+0.5	-0.3	+1.6	N.D.	+0.1