Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00370	PS417_00375	PS417_00380	PS417_00385	PS417_00390
soil	soil sample 5; outgrowth in LB	-4.9	-0.7	-0.7	-4.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-5.4	-2.1	-0.6	-1.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	-1.0	-1.0	-5.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.5	-0.8	-5.3	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-5.1	-0.8	-1.0	-0.4	-0.6
soil	soil sample 6; outgrowth in LB	-3.1	-0.8	-0.5	-1.9	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.9	-0.5	-0.4	-2.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.7	-0.7	-3.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-1.1	-0.4	-3.7	-0.6
soil	soil sample 8; outgrowth in LB	-0.5	-0.1	-0.3	-4.7	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.4	-0.1	-5.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.9	-0.0	-3.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	-0.4	-0.5	-1.7	-0.3
liquid stress	Scopoletin 3 mM; liquid stress	-0.1	-0.4	-0.1	-5.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.0	-0.8	-0.8	-0.9	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.4	+0.7	-0.1	-1.6	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.2	-0.8	-0.6	-0.6	-0.5
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2	+0.2	-0.6	-0.4	-3.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-3.8	-0.5	-0.0	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-0.8	-0.9	+0.5	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.6	+0.3	-3.3	-0.4
phage	JP1 MOI 10	-3.8	-0.1	+0.7	-0.1	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.7	+0.0	-3.6	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-3.5	+0.5	+0.7	-0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.9	-1.3	+1.2	-0.6
motility	outer cut, LB soft agar motility assay	+0.6	-2.2	-0.7	+1.0	-0.8
phage	P. simiae ORA MOI 10	+1.6	-1.8	-0.1	-1.0	-0.4
stress	Cisplatin 0.01 mg/ml	-2.9	+0.6	+0.0	+1.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-1.0	-0.5	+3.9	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.5	+0.5	+1.2	+3.1	+0.8