Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03760 and PS417_03765 overlap by 8 nucleotidesPS417_03765 and PS417_03770 overlap by 8 nucleotidesPS417_03770 and PS417_03775 are separated by 168 nucleotidesPS417_03775 and PS417_03780 overlap by 47 nucleotides PS417_03760: PS417_03760 - isoleucine--tRNA ligase, at 851,125 to 853,956 _03760 PS417_03765: PS417_03765 - peptidase A8, at 853,949 to 854,461 _03765 PS417_03770: PS417_03770 - peptidylprolyl isomerase, at 854,454 to 854,906 _03770 PS417_03775: PS417_03775 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 855,075 to 856,022 _03775 PS417_03780: PS417_03780 - general secretion pathway protein GspH, at 855,976 to 856,557 _03780
Group Condition PS417_03760 PS417_03765 PS417_03770 PS417_03775 PS417_03780
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. N.D. -1.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. N.D. N.D. -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.0
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. N.D. N.D. -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.7
phage P. simiae Grant Run MOI 0.1 N.D. N.D. N.D. N.D. +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.7
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. N.D. N.D. N.D. +0.8
solid stress 80% Methanol 3 mM; solid stress N.D. N.D. N.D. N.D. +0.8
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. N.D. +0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. N.D. N.D. +0.9
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. N.D. N.D. +0.9
ecofab LB in EcoFAB_3.5mL N.D. N.D. N.D. N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.0
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. N.D. N.D. +1.0
phage JP1 MOI 10 N.D. N.D. N.D. N.D. +1.0
phage Wcs_1 N.D. N.D. N.D. N.D. +1.2
carbon source L-Valine (C) N.D. N.D. N.D. N.D. +1.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.6
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