Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF739 and GFF740 are separated by 338 nucleotidesGFF740 and GFF741 are separated by 38 nucleotidesGFF741 and GFF742 are separated by 28 nucleotidesGFF742 and GFF743 are separated by 294 nucleotides GFF739 - BUG/TctC family periplasmic protein, at 1,367 to 2,374 GFF739 GFF740 - Uncharacterized protein YdcJ, at 2,713 to 4,092 GFF740 GFF741 - Transcriptional regulator, LysR family, at 4,131 to 5,024 GFF741 GFF742 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 5,053 to 6,471 GFF742 GFF743 - Hypothetical ABC transport system, periplasmic component, at 6,766 to 7,461 GFF743
Group Condition GFF739 GFF740 GFF741 GFF742 GFF743
complex community Community=guar; Passage=4 +0.0 -0.3 -1.0 N.D. -0.5
complex community Community=Kojac gum; Passage=4 -0.2 -0.0 -0.9 N.D. -0.2
complex community Community=arabino-guar; Passage=4 -0.1 -0.4 -0.2 N.D. -0.5
complex community Community=guar; Passage=4 -0.2 -0.2 -0.6 N.D. -0.2
complex community Community=arabino-guar; Passage=4 -0.2 -0.2 -0.8 N.D. +0.1
complex community Community=arabino-guar; Passage=4 +0.1 +0.2 -1.0 N.D. -0.4
complex community Community=guar; Passage=4 -0.1 +0.2 -0.5 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.1 -0.4 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 -0.1 -0.3 -0.2 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.0 -0.3 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 -0.1 -0.0 -0.0 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 +0.0 -0.4 N.D. -0.1
complex community Community=guar; Passage=4 -0.1 +0.1 -0.6 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.0 -0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.1 -0.1 N.D. -0.3
complex community Community=Locust bean gum; Passage=4 -0.2 -0.2 +0.2 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.0 +0.2 N.D. -0.2
complex community Community=arabino-guar; Passage=4 +0.0 +0.3 -0.2 N.D. -0.2
phage phage_bap4 -0.2 +0.1 +0.1 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus -0.1 +0.2 +0.0 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 -0.1 +0.4 N.D. -0.2
no phage control no phage control -0.0 -0.0 +0.4 N.D. -0.1
phage phage_bap4 +0.0 +0.3 -0.1 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.0 +0.2 N.D. +0.2
phage phage_bap4 -0.2 +0.1 +0.2 N.D. +0.2
complex community Community=Locust bean gum; Passage=4 +0.1 +0.2 +0.2 N.D. -0.1
phage phage_bap4 +0.2 +0.2 +0.5 N.D. -0.3
phage phage_bap4 +0.1 +0.1 +0.2 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 +0.0 +0.2 N.D. +0.3
phage phage_bap4 +0.0 +0.3 +0.3 N.D. +0.1
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