Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03705 and PS417_03710 are separated by 101 nucleotidesPS417_03710 and PS417_03715 are separated by 150 nucleotidesPS417_03715 and PS417_03720 are separated by 9 nucleotidesPS417_03720 and PS417_03725 are separated by 177 nucleotides PS417_03705: PS417_03705 - 2-alkenal reductase, at 838,705 to 839,859 _03705 PS417_03710: PS417_03710 - metal-binding protein, at 839,961 to 840,719 _03710 PS417_03715: PS417_03715 - sulfate adenylyltransferase subunit 2, at 840,870 to 841,787 _03715 PS417_03720: PS417_03720 - adenylylsulfate kinase, at 841,797 to 843,695 _03720 PS417_03725: PS417_03725 - acyltransferase, at 843,873 to 844,772 _03725
Group Condition PS417_03705 PS417_03710 PS417_03715 PS417_03720 PS417_03725
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.1 -0.3 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 +0.6 N.D. N.D. -1.0
phage JP1 MOI 0.1 -0.9 +0.1 N.D. N.D. -1.0
carbon source L-Valine (C) -1.4 +0.3 N.D. N.D. -0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.8 +0.6 N.D. N.D. -0.4
carbon source octanoate (C) -1.4 -0.5 N.D. N.D. +0.3
stress LB_noSalt with Chloride 1100 mM -1.4 +0.4 N.D. N.D. -0.5
stress LB_noSalt with Chloride 1100 mM -1.5 +0.6 N.D. N.D. -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.6 +0.2 N.D. N.D. +0.5
supernatant control Vogels_fungal_media; pH 5.5 -1.3 +0.0 N.D. N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.9 N.D. N.D. -0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.2 +0.1 N.D. N.D. +0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 +0.1 N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 +0.3 N.D. N.D. +0.7
seeds Growth on radish seeds for 72 hours -0.5 -0.4 N.D. N.D. +1.1
agar plate interaction control Taped volatile agar plate with no fungus -1.3 +1.0 N.D. N.D. +0.8
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.8 +0.6 N.D. N.D. +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +0.8 N.D. N.D. -0.4
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 -0.3 N.D. N.D. +1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.1 N.D. N.D. +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 +0.1 N.D. N.D. +2.6
carbon source 2'-Deoxyinosine 5 mM (C) -0.0 +0.4 N.D. N.D. +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.6 N.D. N.D. +1.7
soil soil sample 4; outgrowth in LB +0.4 +0.1 N.D. N.D. +1.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.1 N.D. N.D. +1.8
rhizosphere rhizosphere sample 2; outgrowth in LB +0.5 +0.5 N.D. N.D. +1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.6 N.D. N.D. +1.7
soil soil sample 5; outgrowth in LB +1.0 +0.5 N.D. N.D. +2.0
root root sample 6; outgrowth in LB +1.5 +0.1 N.D. N.D. +2.4
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 +0.8 N.D. N.D. +2.9
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