Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00360	PS417_00365	PS417_00370	PS417_00375	PS417_00380
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-5.4	-2.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-5.1	-0.8	-1.0
soil	soil sample 5; outgrowth in LB	N.D.	-0.1	-4.9	-0.7	-0.7
soil	soil sample 6; outgrowth in LB	N.D.	+0.2	-3.1	-0.8	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-3.8	-0.5	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	-2.2	-0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-1.8	-1.0	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-2.0	-0.8	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-2.5	-0.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-2.1	-1.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.8	-1.5	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.3	-2.9	-0.5	-0.4
phage	JP1 MOI 10	N.D.	-0.2	-3.8	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.0	-1.1	-0.9	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-1.5	-0.7	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-2.2	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-3.4	+0.7	-0.1
liquid stress	80% Methanol 2 mM; liquid stress	N.D.	-0.0	-2.8	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-2.2	-0.4	-0.5
stress	Cisplatin 0.01 mg/ml	N.D.	-0.3	-2.9	+0.6	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.1	-3.5	+0.5	+0.7
motility	outer cut, LB soft agar motility assay	N.D.	+0.0	+0.6	-2.2	-0.7
phage	JP1 MOI 10	N.D.	+0.1	-2.2	-0.7	+0.9
phage	JP1 MOI 0.1	N.D.	+0.1	-2.2	+0.7	+0.7
phage	P. simiae ORA MOI 10	N.D.	+0.2	+1.6	-1.8	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.1	-1.5	+0.5	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	+1.9	-0.9	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	+2.5	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.1	+0.9	-0.5	+2.3
carbon source	L-Valine (C)	N.D.	+0.6	+1.5	+0.9	+0.3