Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03690	PS417_03695	PS417_03700	PS417_03705	PS417_03710
carbon source	octanoate (C)	+0.0	N.D.	-0.1	-1.4	-0.5
phage	P. simiae Grant Run MOI 0.1	-0.1	N.D.	-0.5	-1.0	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	N.D.	-0.1	-1.1	-0.5
carbon source	octanoate (C)	+0.0	N.D.	-0.1	-1.2	-0.3
stress	Polymyxin B sulfate 0.006 mg/ml	-0.1	N.D.	+0.1	-1.2	-0.2
liquid stress	80% Methanol 3 mM; liquid stress	-0.2	N.D.	-0.0	-1.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	N.D.	-0.1	-1.0	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	N.D.	-0.2	-1.8	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	+0.2	-0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	N.D.	+0.0	-1.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.0	-1.5	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	N.D.	+0.3	-1.6	+0.2
stress	LB_noSalt with Chloride 1100 mM	-0.0	N.D.	-0.0	-1.4	+0.4
stress	LB_noSalt with Chloride 1100 mM	-0.0	N.D.	+0.0	-1.5	+0.6
carbon source	L-Valine (C)	-0.0	N.D.	+0.2	-1.4	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	N.D.	+0.1	-1.2	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	N.D.	+0.1	-1.3	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	N.D.	+0.2	-1.1	+0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.3	N.D.	+0.1	-0.8	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	-0.1	-0.9	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	+0.4	-0.9	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	N.D.	+0.0	-1.3	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	+0.4	-0.5	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	N.D.	+0.3	+1.1	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	N.D.	-0.2	+0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-0.4	+0.8	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	N.D.	+0.3	+0.7	+0.4
soil	soil sample 5; outgrowth in LB	-0.1	N.D.	-0.1	+1.0	+0.5
root	root sample 6; outgrowth in LB	-0.2	N.D.	+0.2	+1.5	+0.1
carbon source	Trisodium citrate (C)	-0.0	N.D.	+0.5	+1.0	+0.3