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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF7270 and GFF7271 are separated by 220 nucleotides
GFF7271 and GFF7272 are separated by 19 nucleotides
GFF7272 and GFF7273 are separated by 367 nucleotides
GFF7273 and GFF7274 overlap by 4 nucleotides
GFF7270 - Altronate dehydratase (EC 4.2.1.7), at 18,394 to 19,692
GFF7270
GFF7271 - Transcriptional regulator, LacI family, at 19,913 to 20,887
GFF7271
GFF7272 - D-glucarate permease, at 20,907 to 22,256
GFF7272
GFF7273 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 22,624 to 23,481
GFF7273
GFF7274 - hypothetical protein, at 23,478 to 24,575
GFF7274
Group
Condition
GFF7270
GFF7271
GFF7272
GFF7273
GFF7274
complex community
Community=arabino-guar; Passage=4
-0.1
-1.5
-0.4
-1.2
-0.2
complex community
Community=guar; Passage=4
-0.4
-2.0
+0.1
-0.4
+0.1
complex community
Community=Locust bean gum; Passage=4
-1.2
-0.9
-0.3
+0.1
+0.1
complex community
Community=guar; Passage=4
-2.0
-0.0
-0.2
-0.3
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.1
-0.4
-0.0
-0.5
phage
phage_bap4
-0.2
-0.5
-0.1
+0.1
-0.4
complex community
Community=Kojac gum; Passage=4
-0.8
+0.0
+0.7
-0.4
-0.6
no phage control
no phage control
+0.0
-0.4
-0.3
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-0.4
-0.4
+0.1
-0.0
phage
phage_bap4
+0.0
-0.3
+0.0
-0.4
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
+0.2
-0.1
-0.3
-0.3
complex community
Community=arabino-guar; Passage=4
+0.4
-1.1
-0.3
+0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.1
+0.1
-0.6
+0.1
complex community
Community=Locust bean gum; Passage=4
-1.5
-0.3
+0.2
+0.0
+0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
-0.2
+0.1
+0.3
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
+0.0
-0.3
+0.0
+0.2
complex community
Community=guar; Passage=4
+0.1
-1.0
-0.4
+0.3
+0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.1
-0.2
+0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.3
+0.6
-0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.1
-0.2
+0.4
-0.2
complex community
Community=arabino-guar; Passage=4
+0.2
-0.4
-0.1
+0.8
-0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.5
+0.2
+0.2
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.3
-0.1
+0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.3
-0.1
+0.3
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
+0.2
+0.3
+0.0
+0.1
complex community
Community=arabino-guar; Passage=4
+0.6
-1.0
+0.2
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
-0.1
+0.1
+0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.2
+0.0
+0.5
+0.1
complex community
Community=guar; Passage=4
+0.8
-0.3
+0.7
-0.2
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.0
+0.4
-0.0
+1.1
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