Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03685	PS417_03690	PS417_03695	PS417_03700	PS417_03705
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.1	+0.1	N.D.	-0.2	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.2	N.D.	-0.0	-1.5
carbon source	2'-Deoxyinosine 5 mM (C)	-1.8	-0.1	N.D.	-0.2	-0.4
phage	P. simiae Grant Run MOI 0.1	-0.8	-0.1	N.D.	-0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.6	N.D.	-0.1	-1.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.9	-0.3	N.D.	+0.1	-0.8
stress	LB_noSalt with Chloride 1100 mM	-0.3	-0.0	N.D.	+0.0	-1.5
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.4	-0.1	N.D.	-0.1	-1.2
liquid stress	80% Methanol 3 mM; liquid stress	-0.2	-0.2	N.D.	-0.0	-1.4
nitrogen source	Adenine (N)	-0.7	-0.0	N.D.	-0.3	-0.7
stress	LB_noSalt with Chloride 1100 mM	-0.3	-0.0	N.D.	-0.0	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.3	+0.1	N.D.	+0.4	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	+0.0	N.D.	+0.3	-1.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	+0.3	N.D.	+0.1	-1.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.3	N.D.	+0.0	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	-0.5	N.D.	-0.1	+0.6
phage	JP1 MOI 0.1	-0.5	+0.2	N.D.	+0.1	-0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.1	-0.2	N.D.	-0.2	+0.5
soil	soil sample 3; outgrowth in LB	-1.5	+0.0	N.D.	-0.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	N.D.	-0.1	-1.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.4	-0.0	N.D.	+0.1	-1.3
carbon source	L-Valine (C)	+0.3	-0.0	N.D.	+0.2	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.4	N.D.	-0.2	-0.6
phage	P. simiae ORA MOI 0.1	-0.9	+0.0	N.D.	+0.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.0	N.D.	+0.5	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.6	N.D.	+0.3	+1.1
carbon source	Trisodium citrate (C)	-0.2	-0.0	N.D.	+0.5	+1.0
root	root sample 6; outgrowth in LB	+0.1	-0.2	N.D.	+0.2	+1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.2	N.D.	-0.0	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.8	+0.3	N.D.	-0.1	+0.2