Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03665 and PS417_03670 are separated by 0 nucleotidesPS417_03670 and PS417_03675 are separated by 3 nucleotidesPS417_03675 and PS417_03680 are separated by 111 nucleotidesPS417_03680 and PS417_03685 overlap by 4 nucleotides PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020 _03665 PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950 _03670 PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913 _03675 PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240 _03680 PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223 _03685
Group Condition PS417_03665 PS417_03670 PS417_03675 PS417_03680 PS417_03685
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.6 -1.5 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.8 -1.1 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -2.5 -1.2 N.D. +0.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -1.5 -0.4 N.D. -0.9
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -1.0 -0.1 N.D. -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -2.0 -0.5 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.1 -1.3 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.9 -0.4 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.7 -1.3 N.D. +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.7 -0.8 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.2 -0.7 N.D. -0.0
phage JP1 MOI 10 -0.3 -0.2 -0.1 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.8 +0.2 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.3 +0.3 N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.2 -0.7 N.D. -0.7
soil soil sample 3; outgrowth in LB +0.1 +0.6 -0.3 N.D. -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.7 -0.7 N.D. +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 +0.5 +0.2 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.4 +0.7 N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.1 -0.2 N.D. +1.0
stress methylglyoxal 0.032 vol% +0.5 +0.5 +0.4 N.D. -0.9
seeds Growth on radish seeds for 24 hours +0.4 +0.2 +0.7 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.1 +0.5 N.D. -1.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 +1.3 +0.7 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -0.2 -0.3 N.D. +1.8
rhizosphere rhizosphere sample 1; outgrowth in LB +0.2 +0.8 +1.4 N.D. -1.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.6 +1.1 N.D. +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.9 +0.9 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.2 +1.8 +0.9 N.D. -0.7
root root sample 6; outgrowth in LB +0.5 +1.7 +1.6 N.D. +0.1
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