Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03660 and PS417_03665 overlap by 8 nucleotidesPS417_03665 and PS417_03670 are separated by 0 nucleotidesPS417_03670 and PS417_03675 are separated by 3 nucleotidesPS417_03675 and PS417_03680 are separated by 111 nucleotides PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582 _03660 PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020 _03665 PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950 _03670 PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913 _03675 PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240 _03680
Group Condition PS417_03660 PS417_03665 PS417_03670 PS417_03675 PS417_03680
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.1 -2.5 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.2 -1.6 -1.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.3 -1.8 -1.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 -0.2 -1.5 -0.4 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.0 -0.7 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -0.2 -1.1 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.1 -1.9 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -0.7 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 -1.2 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.5 -2.0 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.0 -0.7 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.2 -1.1 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 +0.1 -0.4 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.2 -0.8 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.2 -0.9 -0.4 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.4 -0.6 -0.2 N.D.
solid stress Fraxetin 3 mM; solid stress +0.6 +0.1 -1.0 +0.2 N.D.
phage P. simiae Grant Run MOI 10 -0.5 -0.0 +0.9 -0.1 N.D.
stress methylglyoxal 0.032 vol% -0.5 +0.5 +0.5 +0.4 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.4 +0.6 +1.1 N.D.
seeds Growth on radish seeds for 72 hours +1.0 -0.4 +0.4 +0.0 N.D.
seeds Growth on radish seeds for 72 hours +0.5 +0.3 +0.7 +0.0 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 -0.3 +1.3 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.1 +0.9 +0.4 N.D.
seeds Growth on radish seeds for 24 hours +0.4 +0.4 +0.2 +0.7 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.4 +0.9 +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.4 +1.1 +0.5 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 +0.2 +0.8 +1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.4 +0.2 +1.8 +0.9 N.D.
root root sample 6; outgrowth in LB -0.1 +0.5 +1.7 +1.6 N.D.
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