Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF7187 and GFF7188 are separated by 205 nucleotidesGFF7188 and GFF7189 are separated by 498 nucleotidesGFF7189 and GFF7190 are separated by 57 nucleotidesGFF7190 and GFF7191 overlap by 4 nucleotides GFF7187 - no description, at 4,357 to 4,470 GFF7187 GFF7188 - Uncharacterized methyltransferase PA1407, at 4,676 to 5,611 GFF7188 GFF7189 - dioxygenase, TauD/TfdA family, at 6,110 to 7,027 GFF7189 GFF7190 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 7,085 to 8,455 GFF7190 GFF7191 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 8,452 to 9,633 GFF7191
Group Condition GFF7187 GFF7188 GFF7189 GFF7190 GFF7191
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.5 -1.0 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.4 -1.0 +0.1 -0.2
phage phage_bap4 N.D. -1.0 -0.1 -0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.9 -0.3 +0.0 -0.4
phage phage_bap4 N.D. -0.7 -0.3 -0.1 -0.2
phage phage_bap4 N.D. -0.2 -0.6 -0.2 -0.0
phage phage_bap4 N.D. -0.1 -0.9 -0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.3 -0.4 -0.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.1 -1.0 +0.2 -0.2
no phage control no phage control N.D. -0.7 -0.3 +0.0 +0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.9 +0.5 -0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.7 -0.3 +0.1 +0.3
complex community Community=Kojac gum; Passage=1 N.D. +0.3 -0.7 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.3 -0.3 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.7 +0.2 +0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.3 -0.5 +0.0 +0.4
complex community Community=Locust bean gum; Passage=4 N.D. +0.6 -1.0 +0.3 +0.0
complex community Community=Locust bean gum; Passage=4 N.D. +1.0 -2.1 +0.4 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.3 -0.2 +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 +0.0 -0.5 +0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.1 +0.8 -0.0 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.4 +0.3 +0.3 +0.2
complex community Community=guar; Passage=4 N.D. +0.5 +0.6 +0.0 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.8 -0.2 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.2 +0.2 +0.2 +0.3
vitamin M9 with Supernatant from Cyptococcus N.D. +0.5 -0.2 +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.4 +0.1 +0.2 +0.4
complex community Community=Locust bean gum; Passage=4 N.D. +1.4 +0.4 -0.3 -0.3
complex community Community=arabino-guar; Passage=4 N.D. +0.1 +1.1 +0.0 +0.0
complex community Community=arabino-guar; Passage=4 N.D. +1.4 +1.1 -0.2 -0.1
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