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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF7176 and GFF7177 are separated by 139 nucleotides
GFF7177 and GFF7178 are separated by 14 nucleotides
GFF7178 and GFF7179 overlap by 4 nucleotides
GFF7179 and GFF7180 are separated by 346 nucleotides
GFF7176 - Transketolase (EC 2.2.1.1), at 39,561 to 41,669
GFF7176
GFF7177 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B, at 41,809 to 42,189
GFF7177
GFF7178 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 42,204 to 42,914
GFF7178
GFF7179 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 42,911 to 44,308
GFF7179
GFF7180 - no description, at 44,655 to 45,350
GFF7180
Group
Condition
GFF7176
GFF7177
GFF7178
GFF7179
GFF7180
complex community
Community=Locust bean gum; Passage=4
N.D.
-0.2
-3.2
-0.3
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-0.0
-3.2
-0.3
-0.5
complex community
Community=arabino-guar; Passage=4
N.D.
-0.0
-3.1
-0.9
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
+0.2
-2.5
-0.4
-0.7
complex community
Community=guar; Passage=4
N.D.
-0.5
-1.9
-0.4
-0.3
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
N.D.
-0.0
-2.3
-0.2
-0.4
complex community
Community=Locust bean gum; Passage=4
N.D.
+0.0
-3.0
-0.2
+0.3
complex community
Community=guar; Passage=4
N.D.
-0.6
-1.2
-0.7
-0.3
complex community
Community=arabino-guar; Passage=4
N.D.
+0.4
-3.2
-0.8
+1.0
complex community
Community=arabino-guar; Passage=4
N.D.
-0.2
-1.6
-0.6
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.2
-2.7
-0.3
+0.4
complex community
Community=guar; Passage=4
N.D.
+0.4
-3.1
-0.5
+0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
N.D.
+0.1
-2.2
-0.3
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-0.1
-2.0
-0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
-0.2
-1.3
-0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-0.0
-1.2
-0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.1
-1.1
-0.2
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.1
-2.0
-0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
+0.1
-1.9
-0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.2
-1.4
-0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-0.0
-1.2
-0.3
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
+0.1
-1.4
-0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.2
-0.9
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-0.0
-1.0
-0.4
+0.2
phage
phage_bap4
N.D.
+0.4
-1.4
+0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
+0.1
-1.0
-0.3
+0.5
complex community
Community=arabino-guar; Passage=4
N.D.
+0.9
-0.5
-0.6
-0.3
complex community
Community=Kojac gum; Passage=4
N.D.
+0.1
-0.5
-0.1
+0.9
complex community
Community=guar; Passage=4
N.D.
+0.3
+1.7
-0.7
-0.5
complex community
Community=Locust bean gum; Passage=4
N.D.
-0.4
+1.3
-0.4
+0.4
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