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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF7162 and GFF7163 are separated by 85 nucleotides
GFF7163 and GFF7164 are separated by 10 nucleotides
GFF7164 and GFF7165 are separated by 8 nucleotides
GFF7165 and GFF7166 are separated by 159 nucleotides
GFF7162 - DNA helicase II related protein, at 26,055 to 27,818
GFF7162
GFF7163 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 27,904 to 28,380
GFF7163
GFF7164 - hypothetical protein, at 28,391 to 29,077
GFF7164
GFF7165 - Adenylate cyclase (EC 4.6.1.1), at 29,086 to 30,669
GFF7165
GFF7166 - Glyoxalase family protein, at 30,829 to 31,251
GFF7166
Group
Condition
GFF7162
GFF7163
GFF7164
GFF7165
GFF7166
complex community
Community=Locust bean gum; Passage=4
+0.0
-1.7
+0.1
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.7
-0.2
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.2
-0.2
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.1
-0.1
-0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.2
+0.0
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.2
+0.0
-0.2
+0.0
complex community
Community=guar; Passage=4
+0.1
-0.5
+0.1
+0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.1
+0.1
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.1
+0.1
-0.2
-0.1
complex community
Community=Locust bean gum; Passage=1
+0.0
-0.1
+0.2
-0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.2
+0.0
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.2
-0.1
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.4
+0.3
-0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.1
-0.1
-0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.3
+0.2
-0.0
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.2
-0.1
-0.2
+0.0
phage
phage_bap4
-0.0
+0.0
-0.1
+0.2
-0.1
phage
phage_bap4
-0.0
-0.2
+0.1
+0.1
+0.1
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.1
-0.1
-0.1
complex community
Community=Kojac gum; Passage=1
-0.0
+0.3
-0.1
-0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.3
-0.1
+0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.3
-0.1
-0.0
-0.0
complex community
Community=arabino-guar; Passage=4
+0.1
+0.5
-0.5
+0.4
-0.1
complex community
Community=Kojac gum; Passage=4
+0.0
+0.2
+0.2
+0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.3
+0.4
-0.3
+0.1
complex community
Community=guar; Passage=4
+0.1
+0.5
-0.0
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
-0.1
+0.3
+0.0
complex community
Community=arabino-guar; Passage=4
+0.2
+0.2
+0.3
+0.0
+0.1
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
+0.6
+0.5
-0.3
complex community
Community=guar; Passage=4
+0.2
+0.1
+0.3
+0.4
-0.0
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