Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF7144 and GFF7145 are separated by 16 nucleotidesGFF7145 and GFF7146 overlap by 4 nucleotidesGFF7146 and GFF7147 overlap by 4 nucleotidesGFF7147 and GFF7148 overlap by 4 nucleotides GFF7144 - KEGG: 4-oxalocrotonate tautomerase , at 11,250 to 11,372 GFF7144 GFF7145 - Transcriptional regulator, GntR family, at 11,389 to 12,087 GFF7145 GFF7146 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 12,084 to 13,388 GFF7146 GFF7147 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 13,385 to 13,639 GFF7147 GFF7148 - D-amino-acid oxidase (EC 1.4.3.3), at 13,636 to 14,739 GFF7148
Group Condition GFF7144 GFF7145 GFF7146 GFF7147 GFF7148
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.0 -0.3 N.D. -0.3
complex community Community=arabino-guar; Passage=4 N.D. -0.1 +0.3 N.D. -0.7
complex community Community=arabino-guar; Passage=4 N.D. -0.4 -0.2 N.D. +0.2
complex community Community=guar; Passage=4 N.D. -0.6 +0.2 N.D. +0.0
complex community Community=Kojac gum; Passage=4 N.D. -0.4 +0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.1 -0.1 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.1 -0.3 N.D. +0.0
phage phage_bap4 N.D. -0.2 -0.1 N.D. +0.1
phage phage_bap4 N.D. -0.0 -0.3 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.1 +0.1 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 -0.3 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.0 -0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=1 N.D. -0.2 +0.2 N.D. -0.0
phage phage_bap4 N.D. +0.2 -0.1 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 -0.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.1 -0.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.0 -0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 -0.2 N.D. +0.2
complex community Community=arabino-guar; Passage=4 N.D. +0.1 +0.6 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.1 -0.1 N.D. +0.2
complex community Community=guar; Passage=4 N.D. -0.1 +0.2 N.D. +0.1
no phage control no phage control N.D. +0.2 -0.0 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 -0.0 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.1 -0.0 N.D. +0.2
complex community Community=guar; Passage=4 N.D. -0.0 +0.4 N.D. -0.0
complex community Community=Locust bean gum; Passage=4 N.D. -0.0 +0.4 N.D. +0.1
complex community Community=guar; Passage=4 N.D. +0.0 +0.2 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 +0.5 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.0 +0.6 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 +0.1 N.D. +0.5
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