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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF708 and GFF709 overlap by 1 nucleotides
GFF709 and GFF710 are separated by 90 nucleotides
GFF710 and GFF711 overlap by 4 nucleotides
GFF711 and GFF712 overlap by 4 nucleotides
GFF708 - Oxidoreductase, GMC family, at 765,571 to 767,286
GFF708
GFF709 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 767,286 to 768,446
GFF709
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
GFF711 - KEGG: ribose transport system permease protein, at 769,478 to 770,443
GFF711
GFF712 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 770,440 to 771,990
GFF712
Group
Condition
GFF708
GFF709
GFF710
GFF711
GFF712
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.3
-1.2
-0.4
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.1
-1.5
-0.4
-0.2
complex community
Community=arabino-guar; Passage=4
-0.4
-0.2
-0.8
+0.0
-0.3
complex community
Community=arabino-guar; Passage=4
-0.1
+0.3
-0.8
-0.5
-0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.2
-0.2
-0.3
-0.4
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.0
-0.7
+0.2
-0.6
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.0
-0.5
-0.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.2
-0.3
-0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.1
-0.2
-0.3
-0.2
complex community
Community=Kojac gum; Passage=1
-0.1
+0.1
-0.4
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.1
-0.4
-0.0
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.0
-0.3
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.0
+0.1
-0.2
-0.5
complex community
Community=Locust bean gum; Passage=1
-0.1
+0.1
-0.4
-0.2
+0.1
complex community
Community=guar; Passage=4
+0.1
-0.3
+0.1
-0.1
-0.3
complex community
Community=guar; Passage=4
-0.2
-0.1
+0.0
+0.3
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.1
-0.4
-0.1
+0.1
complex community
Community=arabino-guar; Passage=4
-0.4
-0.2
+0.6
+0.2
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.0
-0.5
+0.0
-0.0
complex community
Community=guar; Passage=4
-0.2
+0.1
-0.2
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.0
-0.3
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.1
-0.0
-0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.0
+0.3
-0.2
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.1
-0.1
-0.4
+0.5
no phage control
no phage control
-0.0
+0.0
+0.4
-0.1
+0.1
complex community
Community=Kojac gum; Passage=4
-0.0
-0.2
+0.9
+0.3
-0.4
complex community
Community=arabino-guar; Passage=4
+0.2
-0.0
+0.1
+0.2
+0.2
phage
phage_bap4
+0.1
+0.3
+0.3
-0.0
+0.2
phage
phage_bap4
+0.3
+0.3
-0.1
+0.1
+0.5
phage
phage_bap4
+0.4
+0.2
+0.5
+0.3
+0.1
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