Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03555	PS417_03560	PS417_03565	PS417_03570	PS417_03575
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-4.7	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-4.7	N.D.	N.D.	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.0	-4.4	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-4.6	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-4.5	N.D.	N.D.	N.D.
soil	soil sample 4; outgrowth in LB	-0.2	-4.1	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-4.2	N.D.	N.D.	N.D.
motility	outer cut, LB soft agar motility assay	-0.3	-4.0	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-4.4	N.D.	N.D.	N.D.
solid stress	Fraxetin 1 mM; solid stress	-0.1	-3.9	N.D.	N.D.	N.D.
liquid stress	80% Methanol 0.5 mM; liquid stress	-0.1	-3.8	N.D.	N.D.	N.D.
solid stress	Scopoletin 3 mM; solid stress	-0.0	-3.8	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-3.7	N.D.	N.D.	N.D.
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.0	-3.7	N.D.	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.0	-3.6	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-3.7	N.D.	N.D.	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	-3.5	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-3.5	N.D.	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-3.2	N.D.	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-3.1	N.D.	N.D.	N.D.
motility	outer cut, LB soft agar motility assay	-0.2	-3.0	N.D.	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-3.1	N.D.	N.D.	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	-3.1	N.D.	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-3.0	N.D.	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-2.8	N.D.	N.D.	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	-0.3	+2.9	N.D.	N.D.	N.D.
stress	Nalidixic 0.025 mg/ml	-0.2	+3.1	N.D.	N.D.	N.D.
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	+3.0	N.D.	N.D.	N.D.
carbon source	2-Deoxy-D-Ribose (C)	+0.2	+3.3	N.D.	N.D.	N.D.
stress	Gentamicin 0.008 mg/ml	-0.2	+6.8	N.D.	N.D.	N.D.