Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6983 and GFF6984 are separated by 34 nucleotidesGFF6984 and GFF6985 are separated by 177 nucleotidesGFF6985 and GFF6986 are separated by 605 nucleotidesGFF6986 and GFF6987 are separated by 37 nucleotides GFF6983 - FIG140336: TPR domain protein, at 1,470 to 2,747 GFF6983 GFF6984 - RNA polymerase sigma factor for flagellar operon, at 2,782 to 3,468 GFF6984 GFF6985 - Flagellar biosynthesis protein FliP, at 3,646 to 4,419 GFF6985 GFF6986 - hypothetical protein, at 5,025 to 5,522 GFF6986 GFF6987 - hypothetical protein, at 5,560 to 6,498 GFF6987
Group Condition GFF6983 GFF6984 GFF6985 GFF6986 GFF6987
complex community Community=Locust bean gum; Passage=4 -0.4 -0.5 N.D. -1.8 N.D.
complex community Community=guar; Passage=4 +0.7 +1.3 N.D. -4.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.0 N.D. -2.4 N.D.
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 +0.0 N.D. -2.0 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 -0.4 N.D. -1.1 N.D.
complex community Community=guar; Passage=4 -0.1 +0.5 N.D. -2.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.0 N.D. -1.7 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.3 N.D. -0.6 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.1 N.D. -0.4 N.D.
complex community Community=Locust bean gum; Passage=1 +0.0 +0.3 N.D. -1.1 N.D.
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.8 N.D. +0.3 N.D.
complex community Community=Kojac gum; Passage=1 +0.2 -0.0 N.D. -0.8 N.D.
phage phage_bap4 +0.2 +0.2 N.D. -0.4 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.5 N.D. +0.6 N.D.
complex community Community=Locust bean gum; Passage=4 -0.0 -0.7 N.D. +1.1 N.D.
no phage control no phage control -0.3 +0.1 N.D. +0.5 N.D.
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.6 N.D. -0.5 N.D.
complex community Community=arabino-guar; Passage=4 -0.3 +0.3 N.D. +0.4 N.D.
phage phage_bap4 +0.0 -0.2 N.D. +0.7 N.D.
complex community Community=guar; Passage=4 -0.2 +0.4 N.D. +0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 -0.1 N.D. +0.5 N.D.
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.5 N.D. +1.0 N.D.
complex community Community=arabino-guar; Passage=4 +0.8 -0.1 N.D. +0.1 N.D.
complex community Community=arabino-guar; Passage=4 +0.4 +0.1 N.D. +0.4 N.D.
complex community Community=guar; Passage=4 +0.2 +0.6 N.D. +0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.1 N.D. +1.2 N.D.
complex community Community=Locust bean gum; Passage=4 -0.2 +0.3 N.D. +1.2 N.D.
complex community Community=Kojac gum; Passage=4 +0.8 +0.6 N.D. +0.0 N.D.
complex community Community=Locust bean gum; Passage=4 +0.5 -0.1 N.D. +1.3 N.D.
complex community Community=arabino-guar; Passage=4 +0.1 +1.0 N.D. +1.1 N.D.
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